Difference between revisions of "GDPMANDEHYDRA-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYACETONE DIHYDROXYACETONE] == * smiles: ** C(C(CO)=O)O * inchi key: ** InChIKey=RXKJFZQ...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYACETONE DIHYDROXYACETONE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
−
* smiles:
+
* direction:
−
** C(C(CO)=O)O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=RXKJFZQQPQGTFL-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** dihydroxyacetone
+
** GDP-mannose 4,6-dehydratase
−
* molecular weight:
+
* ec number:
−
** 90.079   
+
** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
 
* Synonym(s):
 
* Synonym(s):
−
** glycerone
 
−
** 1,3-dihydroxyacetone
 
−
** dihydroxy-acetone
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[GLYCERONE-KINASE-RXN]]
+
* With identifiers:
−
* [[2.7.1.121-RXN]]
+
** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
−
== Reaction(s) known to produce the compound ==
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-α-D-rhamnose[c] '''+''' 1 H2O[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13093]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13092]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* NCI:
+
* RHEA:
−
** [http://cactus.nci.nih.gov/ncidb2.2/?nsc=24343 24343]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
−
* CAS : 96-26-4
+
* LIGAND-RXN:
−
* METABOLIGHTS : MTBLC16016
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
−
* DRUGBANK : DB01775
+
* UNIPROT:
−
* PUBCHEM:
+
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=670 670]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* HMDB : HMDB01882
+
{{#set: common name=GDP-mannose 4,6-dehydratase}}
−
* LIGAND-CPD:
+
{{#set: ec number=EC-4.2.1.47}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00184 C00184]
+
{{#set: gene associated=Tiso_gene_13093|Tiso_gene_13092}}
−
* CHEMSPIDER:
+
{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
−
** [http://www.chemspider.com/Chemical-Structure.650.html 650]
+
{{#set: reconstruction category=orthology|annotation}}
−
* CHEBI:
+
{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16016 16016]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
* BIGG : dha
+
−
{{#set: smiles=C(C(CO)=O)O}}
+
−
{{#set: inchi key=InChIKey=RXKJFZQQPQGTFL-UHFFFAOYSA-N}}
+
−
{{#set: common name=dihydroxyacetone}}
+
−
{{#set: molecular weight=90.079    }}
+
−
{{#set: common name=glycerone|1,3-dihydroxyacetone|dihydroxy-acetone}}
+
−
{{#set: consumed by=GLYCERONE-KINASE-RXN|2.7.1.121-RXN}}
+

Latest revision as of 20:03, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GDPMANDEHYDRA-RXN&oldid=45595"