Difference between revisions of "Tiso gene 12881"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** prephytoene-diphosphate...")
(Created page with "Category:Gene == Gene Tiso_gene_12881 == * right end position: ** 6539 * transcription direction: ** POSITIVE * left end position: ** 2847 * centisome position: ** 42.7285...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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== Gene Tiso_gene_12881 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6539
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* transcription direction:
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** POSITIVE
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* left end position:
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** 2847
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* centisome position:
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** 42.7285   
 
* Synonym(s):
 
* Synonym(s):
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** prephytoene-diphosphate synthase
 
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** PSase
 
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** geranylgeranyl-diphosphate geranylgeranyltransferase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.6.4.4-RXN]]
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** 1 [[CPD-464]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12321]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 prephytoene diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 15-cis-phytoene[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15914]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=6539}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=2847}}
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{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: centisome position=42.7285    }}
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{{#set: gene associated=Tiso_gene_15914}}
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{{#set: reaction associated=3.6.4.4-RXN}}
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{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Latest revision as of 20:04, 21 March 2018

Gene Tiso_gene_12881

  • right end position:
    • 6539
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2847
  • centisome position:
    • 42.7285
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12881&oldid=45644"