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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == | + | == Gene Tiso_gene_3065 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 7036 |
| − | * common name: | + | * transcription direction: |
| − | ** farnesyltranstransferase | + | ** POSITIVE |
| − | ** geranylgeranyl_pyrophosphate_synthase | + | * left end position: |
| − | * ec number: | + | ** 3122 |
| − | ** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29] | + | * centisome position: |
| | + | ** 17.735615 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[RXN-11856]] |
| − | ** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
| + | ** Source: [[annotation-experimental_annotation]] |
| − | * With common name(s): | + | *** Assignment: ec-number |
| − | ** 1 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 geranylgeranyl diphosphate[c] '''+''' 1 diphosphate[c] | + | == Pathways associated == |
| − | | + | * [[PWY-6829]] |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_7305]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***AUTOMATED-NAME-MATCH
| + | |
| − | * [[Tiso_gene_16284]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
| + | |
| − | ** '''3''' reactions found over '''8''' reactions in the full pathway
| + | |
| − | * [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
| + | |
| − | ** '''1''' reactions found over '''6''' reactions in the full pathway | + | |
| − | * [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659] | + | |
| − | ** '''1''' reactions found over '''8''' reactions in the full pathway
| + | |
| − | * [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
| + | |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | * [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
| + | |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway
| + | |
| − | * [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
| + | |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | * [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
| + | |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517] | + | |
| − | ** '''1''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[synechocystis]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | *** [[athaliana]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=7036}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=3122}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
| + | {{#set: centisome position=17.735615 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=RXN-11856}} |
| − | ** [http://www.uniprot.org/uniprot/P39464 P39464]
| + | {{#set: pathway associated=PWY-6829}} |
| − | ** [http://www.uniprot.org/uniprot/P24322 P24322]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P80042 P80042]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q12051 Q12051]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P95999 P95999]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P48368 P48368]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P93227 P93227]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P93228 P93228]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42698 Q42698]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q43133 Q43133]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42866 Q42866]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P54976 P54976]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=farnesyltranstransferase}} | + | |
| − | {{#set: common name=geranylgeranyl_pyrophosphate_synthase}} | + | |
| − | {{#set: ec number=EC-2.5.1.29}} | + | |
| − | {{#set: gene associated=Tiso_gene_7305|Tiso_gene_16284}} | + | |
| − | {{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7720|PWY-7721|PWY-7517}} | + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
