Difference between revisions of "PWY-7159"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-CARBOXYLTRANSFER-RXN ACETYL-COA-CARBOXYLTRANSFER-RXN] == * direction: ** LEFT-TO-RIGHT *...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-241806 TAX-...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-CARBOXYLTRANSFER-RXN ACETYL-COA-CARBOXYLTRANSFER-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-241806 TAX-241806]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://enzyme.expasy.org/EC/6.4.1.2 EC-6.4.1.2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3312 TAX-3312]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3208 TAX-3208]
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* common name:
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** 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
 
* Synonym(s):
 
* Synonym(s):
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** light-independent aerobic 3,8-divinyl-chlorophyllide a biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''9''' reactions in the full pathway
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** 1 [[ACETYL-COA]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[MALONYL-COA]][c]
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* [[PROTOPORGENOXI-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 acetyl-CoA[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 malonyl-CoA[c]
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*** [[Tiso_gene_11986]]
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*** [[Tiso_gene_15401]]
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== Genes associated with this reaction  ==
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** 6 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_3800]]
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[athaliana]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-5282]]
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* [[Tiso_gene_5029]]
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** 0 associated gene:
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** [[pantograph]]-[[esiliculosus]]
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_2812]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-5283]]
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* [[Tiso_gene_7965]]
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** 0 associated gene:
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** EXPERIMENTAL_ANNOTATION
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** 1 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[manual-primary_network]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN-5284]]
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** [[pantograph]]-[[athaliana]]
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** 0 associated gene:
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** [[pantograph]]-[[esiliculosus]]
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[manual-primary_network]]
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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* [[RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY-6722]], candicidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6722 PWY-6722]
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*** [[Tiso_gene_19451]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** 5 reconstruction source(s) associated:
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* [[PWY-5743]], 3-hydroxypropanoate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743]
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*** [[annotation-experimental_annotation]]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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*** [[manual-primary_network]]
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* [[PWY-5744]], glyoxylate assimilation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744]
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*** [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
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*** [[orthology-esiliculosus]]
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** '''8''' reactions found over '''16''' reactions in the full pathway
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* [[RXN0-1461]]
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* [[PWY-6679]], jadomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6679 PWY-6679]
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** 5 associated gene(s):
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** '''1''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_3671]]
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* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
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*** [[Tiso_gene_2247]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_13364]]
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== Reconstruction information  ==
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*** [[Tiso_gene_13365]]
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* [[orthology]]:
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*** [[Tiso_gene_2246]]
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** [[pantograph]]:
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** 7 reconstruction source(s) associated:
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*** [[athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[esiliculosus]]
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*** [[orthology-esiliculosus]]
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* [[manual]]:
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*** [[annotation-in-silico_annotation]]
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** [[primary_network]]
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*** [[orthology-athaliana]]
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* [[annotation]]:
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*** [[orthology-synechocystis]]
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** [[pathwaytools]]:
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*** [[manual-primary_network]]
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*** [[experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[in-silico_annotation]]
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* [[RXN1F-20]]
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** 3 associated gene(s):
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*** [[Tiso_gene_11960]]
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*** [[Tiso_gene_5993]]
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*** [[Tiso_gene_9870]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[UROGENDECARBOX-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18743]]
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*** [[Tiso_gene_19684]]
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*** [[Tiso_gene_18744]]
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*** [[Tiso_gene_5173]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17485 RXN-17485]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* PLANTCYC : PWY-7159
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11308 11308]
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{{#set: taxonomic range=TAX-241806}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00742 R00742]
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{{#set: taxonomic range=TAX-1117}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-3041}}
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{{#set: ec number=EC-6.4.1.2}}
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{{#set: taxonomic range=TAX-3312}}
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{{#set: gene associated=Tiso_gene_3800|Tiso_gene_5029|Tiso_gene_2812|Tiso_gene_7965}}
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{{#set: taxonomic range=TAX-3208}}
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{{#set: in pathway=PWY-7388|PWY-6722|PWY-5743|PWY-5744|PWY-5789|PWY-6679|PWY-4381}}
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{{#set: common name=3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=light-independent aerobic 3,8-divinyl-chlorophyllide a biosynthesis}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reaction found=8}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=manual}}
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{{#set: completion rate=89.0}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:19, 21 March 2018

Pathway PWY-7159

  • taxonomic range:
  • common name:
    • 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
  • Synonym(s):
    • light-independent aerobic 3,8-divinyl-chlorophyllide a biosynthesis

Reaction(s) found

8 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

  • PLANTCYC : PWY-7159






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