Difference between revisions of "GDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTOCHROME-C-PEROXIDASE-RXN CYTOCHROME-C-PEROXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_diphosp...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTOCHROME-C-PEROXIDASE-RXN CYTOCHROME-C-PEROXIDASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ascorbate_peroxidase
 
−
** cytochrome-c_peroxidase
 
−
** peroxidase
 
 
** ORF
 
** ORF
 +
** nucleoside_diphosphate_kinase
 +
** adenylate_kinase_domain-containing_protein_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.11.1.5 EC-1.11.1.5]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Cytochromes-C-Reduced]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[Cytochromes-C-Oxidized]][c]
+
** 1 [[GDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GTP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hydrogen peroxide[c] '''+''' 2 H+[c] '''+''' 2 a reduced c-type cytochrome[c] '''=>''' 2 H2O[c] '''+''' 2 an oxidized c-type cytochrome[c]
+
** 1 GDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 GTP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11607]]
+
* Gene: [[Tiso_gene_17271]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_4992]]
+
* Gene: [[Tiso_gene_195]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_4990]]
+
* Gene: [[Tiso_gene_9290]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_18224]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_5435]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_17272]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_16529]]
−
* [[Tiso_gene_19683]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_11606]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[primary_network]]
+
** Source: [[orthology-athaliana]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00017 R00017]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P55929 P55929]
+
−
** [http://www.uniprot.org/uniprot/O66533 O66533]
+
−
** [http://www.uniprot.org/uniprot/Q9RYL1 Q9RYL1]
+
−
** [http://www.uniprot.org/uniprot/Q9KVQ2 Q9KVQ2]
+
−
** [http://www.uniprot.org/uniprot/Q9ZJF8 Q9ZJF8]
+
−
** [http://www.uniprot.org/uniprot/O25997 O25997]
+
−
** [http://www.uniprot.org/uniprot/Q9PIE3 Q9PIE3]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ91 Q9PJ91]
+
−
** [http://www.uniprot.org/uniprot/Q8X5N0 Q8X5N0]
+
−
** [http://www.uniprot.org/uniprot/P14532 P14532]
+
−
** [http://www.uniprot.org/uniprot/P00431 P00431]
+
−
** [http://www.uniprot.org/uniprot/P37197 P37197]
+
−
** [http://www.uniprot.org/uniprot/Q51658 Q51658]
+
−
** [http://www.uniprot.org/uniprot/Q50233 Q50233]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ascorbate_peroxidase}}
 
−
{{#set: common name=cytochrome-c_peroxidase}}
 
−
{{#set: common name=peroxidase}}
 
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.11.1.5}}
+
{{#set: common name=nucleoside_diphosphate_kinase}}
−
{{#set: gene associated=Tiso_gene_11607|Tiso_gene_4992|Tiso_gene_4990|Tiso_gene_5435|Tiso_gene_19683|Tiso_gene_11606}}
+
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: reconstruction category=manual}}
+
{{#set: gene associated=Tiso_gene_17271|Tiso_gene_195|Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_17272|Tiso_gene_16529}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: in pathway=PWY-7221|PPGPPMET-PWY}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:19, 21 March 2018

Reaction GDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • nucleoside_diphosphate_kinase
    • adenylate_kinase_domain-containing_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP[c] + 1 ATP[c] => 1 ADP[c] + 1 GTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
    • 4 reactions found over 4 reactions in the full pathway
  • PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






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