Difference between revisions of "3.5.1.27-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-308 CPD-308] == * smiles: ** C([O-])(=O)CCC([N+]C(C(=O)[O-])CCCNC(N)=[N+])C([O-])=O * inchi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.27-RXN 3.5.1.27-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polypeptide_deformyla...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-308 CPD-308] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.27-RXN 3.5.1.27-RXN] ==
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* smiles:
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* direction:
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** C([O-])(=O)CCC([N+]C(C(=O)[O-])CCCNC(N)=[N+])C([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=LMKYZBGVKHTLTN-NKWVEPMBSA-M
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* common name:
 
* common name:
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** D-nopaline
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** polypeptide_deformylase
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* molecular weight:
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* ec number:
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** 303.294   
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** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88]
 
* Synonym(s):
 
* Synonym(s):
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** N2-(D-1,3-dicarboxypropyl)-L-arginine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[1.5.1.19-RXN]]
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** 1 [[Charged-fMET-tRNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-Methionylaminoacyl-tRNAs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FORMATE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 an N-formyl-L-methionylaminoacyl-tRNA[c] '''+''' 1 H2O[c] '''=>''' 1 a L-methionylaminoacyl-tRNA[c] '''+''' 1 H+[c] '''+''' 1 formate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_14998]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791983 49791983]
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** [http://www.genome.jp/dbget-bin/www_bget?R04268 R04268]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58074 58074]
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** [http://www.uniprot.org/uniprot/P44786 P44786]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P0A6K3 P0A6K3]
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** [http://www.genome.jp/dbget-bin/www_bget?C01682 C01682]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: smiles=C([O-])(=O)CCC([N+]C(C(=O)[O-])CCCNC(N)=[N+])C([O-])=O}}
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{{#set: common name=polypeptide_deformylase}}
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{{#set: inchi key=InChIKey=LMKYZBGVKHTLTN-NKWVEPMBSA-M}}
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{{#set: ec number=EC-3.5.1.88}}
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{{#set: common name=D-nopaline}}
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{{#set: gene associated=Tiso_gene_14998}}
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{{#set: molecular weight=303.294    }}
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{{#set: in pathway=}}
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{{#set: common name=N2-(D-1,3-dicarboxypropyl)-L-arginine}}
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{{#set: reconstruction category=annotation}}
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{{#set: produced by=1.5.1.19-RXN}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:10, 21 March 2018

Reaction 3.5.1.27-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polypeptide_deformylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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