Difference between revisions of "PGPPHOSPHA-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] == * direction: ** REVERSIBLE *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protein-tyrosine_...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pentafunctional_protein
+
** protein-tyrosine_phosphatase_mitochondrial_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.10 EC-4.2.1.10]
+
** [http://enzyme.expasy.org/EC/3.1.3.27 EC-3.1.3.27]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c]
+
** 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-dehydroquinate[c] '''<=>''' 1 H2O[c] '''+''' 1 3-dehydroshikimate[c]
+
** 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 an L-1-phosphatidyl-sn-glycerol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8720]]
+
* Gene: [[Tiso_gene_18092]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5753]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5752]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5619]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14718]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707]
+
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6416]], quinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6416 PWY-6416]
+
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
 +
** '''7''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[QUINATEDEG-PWY]], quinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=QUINATEDEG-PWY QUINATEDEG-PWY]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[manual]]:
+
*** Tool: [[pathwaytools]]
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21096 21096]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16725 16725]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02029 R02029]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05195 P05195]
+
** [http://www.uniprot.org/uniprot/P18200 P18200]
−
** [http://www.uniprot.org/uniprot/P46380 P46380]
+
** [http://www.uniprot.org/uniprot/Q9JRA8 Q9JRA8]
−
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
+
** [http://www.uniprot.org/uniprot/Q9PM65 Q9PM65]
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/P0A924 P0A924]
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P43878 P43878]
+
{{#set: common name=protein-tyrosine_phosphatase_mitochondrial_1}}
−
** [http://www.uniprot.org/uniprot/P05194 P05194]
+
{{#set: ec number=EC-3.1.3.27}}
−
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
+
{{#set: gene associated=Tiso_gene_18092}}
−
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
+
{{#set: in pathway=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
−
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
+
−
** [http://www.uniprot.org/uniprot/P05147 P05147]
+
−
** [http://www.uniprot.org/uniprot/P24670 P24670]
+
−
** [http://www.uniprot.org/uniprot/P35146 P35146]
+
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
+
−
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
+
−
** [http://www.uniprot.org/uniprot/P73367 P73367]
+
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=pentafunctional_protein}}
+
−
{{#set: ec number=EC-4.2.1.10}}
+
−
{{#set: gene associated=Tiso_gene_8720|Tiso_gene_5753|Tiso_gene_5752|Tiso_gene_5619|Tiso_gene_14718}}
+
−
{{#set: in pathway=PWY-6707|PWY-6416|QUINATEDEG-PWY|PWY-6163}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 20:10, 21 March 2018

Reaction PGPPHOSPHA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protein-tyrosine_phosphatase_mitochondrial_1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic): PWY4FS-7
    • 3 reactions found over 4 reactions in the full pathway
  • PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic): PWY4FS-8
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5269, cardiolipin biosynthesis II: PWY-5269
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus): PWY-7817
    • 7 reactions found over 16 reactions in the full pathway
  • PWY-5668, cardiolipin biosynthesis I: PWY-5668
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1545, cardiolipin biosynthesis III: PWY0-1545
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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