Difference between revisions of "RXN-12611"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_13268 == * left end position: ** 4159 * transcription direction: ** NEGATIVE * right end position: ** 6381 * centisome position: ** 64.8829...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12611 RXN-12611] == * direction: ** LEFT-TO-RIGHT * common name: ** thiamin phosphate synthase...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12611 RXN-12611] == |
| − | * | + | * direction: |
| − | ** | + | ** LEFT-TO-RIGHT |
| − | * | + | * common name: |
| − | ** | + | ** thiamin phosphate synthase |
| − | * | + | ** ORF |
| − | ** | + | ** thiamine_monophosphate_synthase |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3] |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | * | + | ** 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[CPD-13575]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[THIAMINE-P]][c] '''+''' 1 [[PPI]][c] |
| − | ** | + | * With common name(s): |
| − | + | ** 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate[c] '''+''' 2 H+[c] '''=>''' 1 CO2[c] '''+''' 1 thiamine phosphate[c] '''+''' 1 diphosphate[c] | |
| − | + | ||
| − | + | == Genes associated with this reaction == | |
| − | * [[ | + | Genes have been associated with this reaction based on different elements listed below. |
| − | ** in-silico_annotation | + | * Gene: [[Tiso_gene_2159]] |
| − | *** | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[ | + | *** Assignment: EC-NUMBER |
| − | ** in-silico_annotation | + | * Gene: [[Tiso_gene_2160]] |
| − | *** | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[ | + | *** Assignment: EC-NUMBER |
| − | ** in-silico_annotation | + | * Gene: [[Tiso_gene_10320]] |
| − | *** | + | ** Source: [[annotation-in-silico_annotation]] |
| − | == Pathways | + | *** Assignment: EC-NUMBER |
| − | * [[PWY- | + | == Pathways == |
| − | * [[ | + | * [[PWY-6894]], thiamine diphosphate biosynthesis I (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] |
| − | * [[ | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
| − | * [[ | + | == Reconstruction information == |
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=thiamin phosphate synthase}} |
| − | {{#set: | + | {{#set: common name=ORF}} |
| − | {{#set: | + | {{#set: common name=thiamine_monophosphate_synthase}} |
| − | {{#set: | + | {{#set: ec number=EC-2.5.1.3}} |
| − | {{#set: pathway | + | {{#set: gene associated=Tiso_gene_2159|Tiso_gene_2160|Tiso_gene_10320}} |
| + | {{#set: in pathway=PWY-6894}} | ||
| + | {{#set: reconstruction category=annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 20:10, 21 March 2018
Contents
Reaction RXN-12611
- direction:
- LEFT-TO-RIGHT
- common name:
- thiamin phosphate synthase
- ORF
- thiamine_monophosphate_synthase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP[c] + 1 CPD-13575[c] + 2 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 THIAMINE-P[c] + 1 PPI[c]
- With common name(s):
- 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] + 1 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate[c] + 2 H+[c] => 1 CO2[c] + 1 thiamine phosphate[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_2159
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_2160
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_10320
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-6894, thiamine diphosphate biosynthesis I (E. coli): PWY-6894
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
