Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-N-ACETYLTRANSFERASE-RXN GLUTAMATE-N-ACETYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-N-ACETYLTRANSFERASE-RXN GLUTAMATE-N-ACETYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** n-acetylglutamate_synthase
 
 
** ORF
 
** ORF
 +
** structural_maintenance_of_chromosomes_protein_6
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.35 EC-2.3.1.35]
+
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[N-ALPHA-ACETYLORNITHINE]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[L-ORNITHINE]][c] '''+''' 1 [[ACETYL-GLU]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[SER-tRNAs]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 N-acetyl-L-ornithine[c] '''+''' 1 L-glutamate[c] '''=>''' 1 L-ornithine[c] '''+''' 1 N-acetyl-L-glutamate[c]
+
** 1 ATP[c] '''+''' 1 a tRNAser[c] '''+''' 1 L-serine[c] '''=>''' 1 an L-seryl-[tRNAser][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5365]]
+
* Gene: [[Tiso_gene_1682]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_11663]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_10015]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_18369]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_587]]
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1684]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
*** [[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[annotation]]:
+
*** Tool: [[pathwaytools]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15349 15349]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02282 R02282]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P38434 P38434]
+
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
−
** [http://www.uniprot.org/uniprot/Q57645 Q57645]
+
** [http://www.uniprot.org/uniprot/O51244 O51244]
−
** [http://www.uniprot.org/uniprot/Q07908 Q07908]
+
** [http://www.uniprot.org/uniprot/O66647 O66647]
−
** [http://www.uniprot.org/uniprot/Q04728 Q04728]
+
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
−
** [http://www.uniprot.org/uniprot/P74122 P74122]
+
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
 +
** [http://www.uniprot.org/uniprot/O27194 O27194]
 +
** [http://www.uniprot.org/uniprot/O84734 O84734]
 +
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 +
** [http://www.uniprot.org/uniprot/P47251 P47251]
 +
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 +
** [http://www.uniprot.org/uniprot/O83653 O83653]
 +
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 +
** [http://www.uniprot.org/uniprot/P49591 P49591]
 +
** [http://www.uniprot.org/uniprot/P56458 P56458]
 +
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 +
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 +
** [http://www.uniprot.org/uniprot/P43833 P43833]
 +
** [http://www.uniprot.org/uniprot/P26636 P26636]
 +
** [http://www.uniprot.org/uniprot/P39919 P39919]
 +
** [http://www.uniprot.org/uniprot/P37464 P37464]
 +
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 +
** [http://www.uniprot.org/uniprot/P75107 P75107]
 +
** [http://www.uniprot.org/uniprot/P73201 P73201]
 +
** [http://www.uniprot.org/uniprot/O82108 O82108]
 +
** [http://www.uniprot.org/uniprot/O82110 O82110]
 +
** [http://www.uniprot.org/uniprot/O81983 O81983]
 +
** [http://www.uniprot.org/uniprot/O45887 O45887]
 +
** [http://www.uniprot.org/uniprot/O14018 O14018]
 +
** [http://www.uniprot.org/uniprot/P54221 P54221]
 +
** [http://www.uniprot.org/uniprot/P07284 P07284]
 +
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=n-acetylglutamate_synthase}}
 
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-2.3.1.35}}
+
{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
−
{{#set: gene associated=Tiso_gene_5365|Tiso_gene_11663|Tiso_gene_18369}}
+
{{#set: ec number=EC-6.1.1.11}}
−
{{#set: in pathway=ARGSYNBSUB-PWY}}
+
{{#set: gene associated=Tiso_gene_1682|Tiso_gene_10015|Tiso_gene_587|Tiso_gene_1684}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:12, 21 March 2018

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAser[c] + 1 L-serine[c] => 1 an L-seryl-[tRNAser][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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