Difference between revisions of "RXN0-4261"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROG-RXN HYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** cytosolic_fe-s_cluster_assem...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-4261 RXN0-4261] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_dna_helicase...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROG-RXN HYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-4261 RXN0-4261] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cytosolic_fe-s_cluster_assembly_factor_narfl
+
** atp-dependent_dna_helicase
−
* ec number:
+
** helicase
−
** [http://enzyme.expasy.org/EC/1.12.7.2 EC-1.12.7.2]
+
** rep_helicase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HYDROGEN-MOLECULE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[Supercoiled-Duplex-DNAs]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[Single-Stranded-DNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''<=>''' 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c]
+
** 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 a supercoiled duplex DNA[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 a single stranded DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4288]]
+
* Gene: [[Tiso_gene_7552]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_5713]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9320]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_7553]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_395]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14420]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14019]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_13200]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14419]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14204]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3462]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6780]], hydrogen production VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6780 PWY-6780]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate): [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6785]], hydrogen production VIII: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6785 PWY-6785]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6759]], hydrogen production III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6759 PWY-6759]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
 
−
** '''5''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
** Source: [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00019 R00019]
+
{{#set: common name=atp-dependent_dna_helicase}}
−
* UNIPROT:
+
{{#set: common name=helicase}}
−
** [http://www.uniprot.org/uniprot/P27648 P27648]
+
{{#set: common name=rep_helicase}}
−
** [http://www.uniprot.org/uniprot/P31892 P31892]
+
{{#set: gene associated=Tiso_gene_7552|Tiso_gene_5713|Tiso_gene_9320|Tiso_gene_7553|Tiso_gene_395|Tiso_gene_14420|Tiso_gene_14019|Tiso_gene_13200|Tiso_gene_14419|Tiso_gene_14204|Tiso_gene_3462}}
−
** [http://www.uniprot.org/uniprot/O25350 O25350]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/O67092 O67092]
+
−
** [http://www.uniprot.org/uniprot/P31891 P31891]
+
−
** [http://www.uniprot.org/uniprot/P0AAJ8 P0AAJ8]
+
−
** [http://www.uniprot.org/uniprot/O66894 O66894]
+
−
** [http://www.uniprot.org/uniprot/P0AAM1 P0AAM1]
+
−
** [http://www.uniprot.org/uniprot/P31898 P31898]
+
−
** [http://www.uniprot.org/uniprot/P0ACE0 P0ACE0]
+
−
** [http://www.uniprot.org/uniprot/O28891 O28891]
+
−
** [http://www.uniprot.org/uniprot/O66895 O66895]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLK4 Q9ZLK4]
+
−
** [http://www.uniprot.org/uniprot/Q9WY44 Q9WY44]
+
−
** [http://www.uniprot.org/uniprot/Q46508 Q46508]
+
−
** [http://www.uniprot.org/uniprot/O66896 O66896]
+
−
** [http://www.uniprot.org/uniprot/O67095 O67095]
+
−
** [http://www.uniprot.org/uniprot/Q9PN32 Q9PN32]
+
−
** [http://www.uniprot.org/uniprot/P13061 P13061]
+
−
** [http://www.uniprot.org/uniprot/Q9UYN3 Q9UYN3]
+
−
** [http://www.uniprot.org/uniprot/P16429 P16429]
+
−
** [http://www.uniprot.org/uniprot/O52683 O52683]
+
−
** [http://www.uniprot.org/uniprot/P13066 P13066]
+
−
** [http://www.uniprot.org/uniprot/O25349 O25349]
+
−
** [http://www.uniprot.org/uniprot/P0AAK1 P0AAK1]
+
−
** [http://www.uniprot.org/uniprot/P29166 P29166]
+
−
** [http://www.uniprot.org/uniprot/P07603 P07603]
+
−
** [http://www.uniprot.org/uniprot/P13628 P13628]
+
−
** [http://www.uniprot.org/uniprot/P0ACD8 P0ACD8]
+
−
** [http://www.uniprot.org/uniprot/P69739 P69739]
+
−
** [http://www.uniprot.org/uniprot/P12636 P12636]
+
−
** [http://www.uniprot.org/uniprot/P12635 P12635]
+
−
** [http://www.uniprot.org/uniprot/Q59262 Q59262]
+
−
** [http://www.uniprot.org/uniprot/P33375 P33375]
+
−
** [http://www.uniprot.org/uniprot/P33374 P33374]
+
−
** [http://www.uniprot.org/uniprot/P21950 P21950]
+
−
** [http://www.uniprot.org/uniprot/P21949 P21949]
+
−
** [http://www.uniprot.org/uniprot/P23000 P23000]
+
−
** [http://www.uniprot.org/uniprot/Q7M121 Q7M121]
+
−
** [http://www.uniprot.org/uniprot/P15283 P15283]
+
−
** [http://www.uniprot.org/uniprot/P15284 P15284]
+
−
** [http://www.uniprot.org/uniprot/P16430 P16430]
+
−
** [http://www.uniprot.org/uniprot/P16431 P16431]
+
−
** [http://www.uniprot.org/uniprot/P16432 P16432]
+
−
** [http://www.uniprot.org/uniprot/P16433 P16433]
+
−
** [http://www.uniprot.org/uniprot/P17633 P17633]
+
−
** [http://www.uniprot.org/uniprot/P17632 P17632]
+
−
** [http://www.uniprot.org/uniprot/P18191 P18191]
+
−
** [http://www.uniprot.org/uniprot/P18637 P18637]
+
−
** [http://www.uniprot.org/uniprot/P18636 P18636]
+
−
** [http://www.uniprot.org/uniprot/Q46606 Q46606]
+
−
** [http://www.uniprot.org/uniprot/P31875 P31875]
+
−
** [http://www.uniprot.org/uniprot/Q7M0Y1 Q7M0Y1]
+
−
** [http://www.uniprot.org/uniprot/Q7M0Y0 Q7M0Y0]
+
−
** [http://www.uniprot.org/uniprot/Q9S8S0 Q9S8S0]
+
−
** [http://www.uniprot.org/uniprot/P31883 P31883]
+
−
** [http://www.uniprot.org/uniprot/P21960 P21960]
+
−
** [http://www.uniprot.org/uniprot/Q43953 Q43953]
+
−
** [http://www.uniprot.org/uniprot/O96948 O96948]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=cytosolic_fe-s_cluster_assembly_factor_narfl}}
+
−
{{#set: ec number=EC-1.12.7.2}}
+
−
{{#set: gene associated=Tiso_gene_4288}}
+
−
{{#set: in pathway=PWY-6780|GLUDEG-II-PWY|PWY-6785|PWY-6759|PWY4LZ-257}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 20:12, 21 March 2018

Reaction RXN0-4261

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • atp-dependent_dna_helicase
    • helicase
    • rep_helicase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-4261&oldid=46776"