Difference between revisions of "Tiso gene 3271"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Gene == Gene Tiso_gene_3271 == * right end position: ** 8714 * transcription direction: ** POSITIVE * left end position: ** 6655 * centisome position: ** 38.89766...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] ==
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== Gene Tiso_gene_3271 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8714
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* common name:
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* transcription direction:
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** chorismate_synthase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.2.3.5 EC-4.2.3.5]
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** 6655
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* centisome position:
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** 38.89766   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.1.4.1-RXN]]
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** 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CHORISMATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 5-enolpyruvoyl-shikimate 3-phosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 chorismate[c]
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* Reaction: [[ALKAPHOSPHA-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-5822]]
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* [[Tiso_gene_9630]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-8748]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[athaliana]]
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== Pathways associated ==
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-5491]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5083]]
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** [[pantograph]]-[[creinhardtii]]
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* [[NADPHOS-DEPHOS-PWY]]
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== Pathways  ==
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* [[NAD-BIOSYNTHESIS-II]]
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8714}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21020 21020]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6655}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
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{{#set: centisome position=38.89766    }}
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* UNIPROT:
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{{#set: reaction associated=3.1.4.1-RXN|ALKAPHOSPHA-RXN|RXN-5822|RXN-8748}}
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** [http://www.uniprot.org/uniprot/P27793 P27793]
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{{#set: pathway associated=PWY-5491|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
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** [http://www.uniprot.org/uniprot/P23353 P23353]
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** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
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** [http://www.uniprot.org/uniprot/Q58575 Q58575]
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** [http://www.uniprot.org/uniprot/P43875 P43875]
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** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
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** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
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** [http://www.uniprot.org/uniprot/P28777 P28777]
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** [http://www.uniprot.org/uniprot/Q42885 Q42885]
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** [http://www.uniprot.org/uniprot/Q42884 Q42884]
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** [http://www.uniprot.org/uniprot/P16280 P16280]
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** [http://www.uniprot.org/uniprot/P12008 P12008]
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** [http://www.uniprot.org/uniprot/O74413 O74413]
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** [http://www.uniprot.org/uniprot/Q12640 Q12640]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=chorismate_synthase}}
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{{#set: ec number=EC-4.2.3.5}}
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{{#set: gene associated=Tiso_gene_9630}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:12, 21 March 2018

Gene Tiso_gene_3271

  • right end position:
    • 8714
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6655
  • centisome position:
    • 38.89766
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3271&oldid=46840"