Difference between revisions of "RXN-3521"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3521 RXN-3521] == * direction: ** LEFT-TO-RIGHT * common name: ** ascorbate_peroxidase * Synony...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3521 RXN-3521] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoglycerate_mutase
+
** ascorbate_peroxidase
−
** bisphosphoglycerate-dependent_phosphoglycerate_mutase
+
−
** ORF
+
−
** plastid_phosphoglycerate_mutase_protein
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** L-ascorbic acid peroxidase
 +
** L-ascorbic acid-specific peroxidase
 +
** ascorbic acid peroxidase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
+
** 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[ASCORBATE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[CPD-318]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c]
+
** 1 hydrogen peroxide[c] '''+''' 2 L-ascorbate[c] '''+''' 2 H+[c] '''=>''' 2 H2O[c] '''+''' 2 monodehydroascorbate radical[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7201]]
+
* Gene: [[Tiso_gene_16028]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_9922]]
+
* Gene: [[Tiso_gene_15962]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_20311]]
+
* Gene: [[Tiso_gene_5435]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_15391]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_14664]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2841]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9923]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15048]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_14530]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10516]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_14212]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_16754]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_5468]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_2667]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_16271]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
* [[PWY-2261]], ascorbate glutathione cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
−
** '''8''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
+
−
** '''8''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+
−
** '''8''' reactions found over '''14''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
+
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30266 30266]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
+
** [http://www.genome.jp/dbget-bin/www_bget?R09540 R09540]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00644 R00644]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P30792 P30792]
+
** [http://www.uniprot.org/uniprot/P48534 P48534]
−
** [http://www.uniprot.org/uniprot/P52832 P52832]
+
** [http://www.uniprot.org/uniprot/Q7M287 Q7M287]
−
** [http://www.uniprot.org/uniprot/P44865 P44865]
+
** [http://www.uniprot.org/uniprot/O49159 O49159]
−
** [http://www.uniprot.org/uniprot/P30798 P30798]
+
** [http://www.uniprot.org/uniprot/Q7M3G0 Q7M3G0]
−
** [http://www.uniprot.org/uniprot/P62707 P62707]
+
** [http://www.uniprot.org/uniprot/Q05431 Q05431]
−
** [http://www.uniprot.org/uniprot/P39773 P39773]
+
** [http://www.uniprot.org/uniprot/Q43824 Q43824]
−
** [http://www.uniprot.org/uniprot/P47669 P47669]
+
** [http://www.uniprot.org/uniprot/Q41772 Q41772]
−
** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
+
** [http://www.uniprot.org/uniprot/Q41371 Q41371]
−
** [http://www.uniprot.org/uniprot/P56196 P56196]
+
** [http://www.uniprot.org/uniprot/Q42661 Q42661]
−
** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
+
** [http://www.uniprot.org/uniprot/Q42564 Q42564]
−
** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
+
** [http://www.uniprot.org/uniprot/O46921 O46921]
−
** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
+
** [http://www.uniprot.org/uniprot/P93404 P93404]
−
** [http://www.uniprot.org/uniprot/P00950 P00950]
+
** [http://www.uniprot.org/uniprot/Q9FE01 Q9FE01]
−
** [http://www.uniprot.org/uniprot/P18669 P18669]
+
** [http://www.uniprot.org/uniprot/O65634 O65634]
−
** [http://www.uniprot.org/uniprot/P15259 P15259]
+
** [http://www.uniprot.org/uniprot/Q39843 Q39843]
−
** [http://www.uniprot.org/uniprot/P16290 P16290]
+
** [http://www.uniprot.org/uniprot/O49122 O49122]
−
** [http://www.uniprot.org/uniprot/P35167 P35167]
+
** [http://www.uniprot.org/uniprot/O49822 O49822]
−
** [http://www.uniprot.org/uniprot/P33158 P33158]
+
** [http://www.uniprot.org/uniprot/Q42459 Q42459]
−
** [http://www.uniprot.org/uniprot/Q06464 Q06464]
+
** [http://www.uniprot.org/uniprot/Q39780 Q39780]
−
** [http://www.uniprot.org/uniprot/P36623 P36623]
+
** [http://www.uniprot.org/uniprot/Q96399 Q96399]
−
** [http://www.uniprot.org/uniprot/P35494 P35494]
+
** [http://www.uniprot.org/uniprot/O81333 O81333]
−
** [http://www.uniprot.org/uniprot/P37689 P37689]
+
** [http://www.uniprot.org/uniprot/O81603 O81603]
−
** [http://www.uniprot.org/uniprot/P35493 P35493]
+
** [http://www.uniprot.org/uniprot/O81604 O81604]
−
** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
+
** [http://www.uniprot.org/uniprot/Q42909 Q42909]
−
** [http://www.uniprot.org/uniprot/Q42908 Q42908]
+
** [http://www.uniprot.org/uniprot/Q9STM9 Q9STM9]
−
** [http://www.uniprot.org/uniprot/Q12326 Q12326]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P53531 P53531]
+
{{#set: common name=ascorbate_peroxidase}}
−
** [http://www.uniprot.org/uniprot/P51379 P51379]
+
{{#set: common name=L-ascorbic acid peroxidase|L-ascorbic acid-specific peroxidase|ascorbic acid peroxidase}}
−
** [http://www.uniprot.org/uniprot/P75167 P75167]
+
{{#set: gene associated=Tiso_gene_16028|Tiso_gene_15962|Tiso_gene_5435}}
−
** [http://www.uniprot.org/uniprot/P72649 P72649]
+
{{#set: in pathway=PWY-2261}}
−
** [http://www.uniprot.org/uniprot/P74507 P74507]
+
−
** [http://www.uniprot.org/uniprot/Q49006 Q49006]
+
−
** [http://www.uniprot.org/uniprot/O24246 O24246]
+
−
** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=phosphoglycerate_mutase}}
+
−
{{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
+
−
{{#set: ec number=EC-5.4.2.12}}
+
−
{{#set: gene associated=Tiso_gene_7201|Tiso_gene_9922|Tiso_gene_20311|Tiso_gene_15391|Tiso_gene_14664|Tiso_gene_2841|Tiso_gene_9923|Tiso_gene_15048|Tiso_gene_14530|Tiso_gene_2365|Tiso_gene_10516|Tiso_gene_14212|Tiso_gene_16754|Tiso_gene_5468|Tiso_gene_2667|Tiso_gene_16271}}
+
−
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 21:13, 21 March 2018

Reaction RXN-3521

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ascorbate_peroxidase
  • Synonym(s):
    • L-ascorbic acid peroxidase
    • L-ascorbic acid-specific peroxidase
    • ascorbic acid peroxidase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hydrogen peroxide[c] + 2 L-ascorbate[c] + 2 H+[c] => 2 H2O[c] + 2 monodehydroascorbate radical[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2261, ascorbate glutathione cycle: PWY-2261
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-3521&oldid=46953"