Difference between revisions of "GUANOSINE-5DP-3DP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.25-RXN 1.2.1.25-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-2-oxobutanoa...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GUANOSINE-5DP-3DP GUANOSINE-5DP-3DP] == * smiles: ** C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.25-RXN 1.2.1.25-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GUANOSINE-5DP-3DP GUANOSINE-5DP-3DP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP([O-])([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
 
* common name:
 
* common name:
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** 3-methyl-2-oxobutanoate_dehydrogenase
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** ppGpp
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/1.2.1.25 EC-1.2.1.25]
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** InChIKey=BUFLLCUFNHESEH-UUOKFMHZSA-I
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* molecular weight:
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** 598.123   
 
* Synonym(s):
 
* Synonym(s):
 +
** guanosine tetraphosphate
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** guanosine 5'-diphosphate,3'-diphosphate
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** guanosine 3',5'-bispyrophosphate
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** guanosine 3',5'-bis(diphosphate)
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** guanosine 3'-diphosphate 5'-diphosphate
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** magic spot
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** guanosine-5',3'-tetraphosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[PPGPPSYN-RXN]]
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** 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ISOBUTYRYL-COA]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[GDPPYPHOSKIN-RXN]]
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** 1 3-methyl-2-oxobutanoate[c] '''+''' 1 NAD+[c] '''+''' 1 coenzyme A[c] '''=>''' 1 NADH[c] '''+''' 1 CO2[c] '''+''' 1 isobutanoyl-CoA[c]
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== Reaction(s) of unknown directionality ==
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* [[GBDP]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_11793]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_3260]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* DRUGBANK : DB04022
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13997 13997]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15938967 15938967]
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** [http://www.genome.jp/dbget-bin/www_bget?R01210 R01210]
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* HMDB : HMDB59638
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=3-methyl-2-oxobutanoate_dehydrogenase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01228 C01228]
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{{#set: ec number=EC-1.2.1.25}}
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* CHEMSPIDER:
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{{#set: gene associated=Tiso_gene_11793|Tiso_gene_3260}}
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** [http://www.chemspider.com/Chemical-Structure.13082026.html 13082026]
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{{#set: in pathway=VALDEG-PWY}}
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* CHEBI:
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{{#set: reconstruction category=annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=77828 77828]
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{{#set: reconstruction tool=pathwaytools}}
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* BIGG : ppgpp
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: smiles=C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP([O-])([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))}}
 +
{{#set: common name=ppGpp}}
 +
{{#set: inchi key=InChIKey=BUFLLCUFNHESEH-UUOKFMHZSA-I}}
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{{#set: molecular weight=598.123    }}
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{{#set: common name=guanosine tetraphosphate|guanosine 5'-diphosphate,3'-diphosphate|guanosine 3',5'-bispyrophosphate|guanosine 3',5'-bis(diphosphate)|guanosine 3'-diphosphate 5'-diphosphate|magic spot|guanosine-5',3'-tetraphosphate}}
 +
{{#set: consumed by=PPGPPSYN-RXN}}
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{{#set: produced by=GDPPYPHOSKIN-RXN}}
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{{#set: reversible reaction associated=GBDP}}

Latest revision as of 19:20, 21 March 2018

Metabolite GUANOSINE-5DP-3DP

  • smiles:
    • C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP([O-])([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
  • common name:
    • ppGpp
  • inchi key:
    • InChIKey=BUFLLCUFNHESEH-UUOKFMHZSA-I
  • molecular weight:
    • 598.123
  • Synonym(s):
    • guanosine tetraphosphate
    • guanosine 5'-diphosphate,3'-diphosphate
    • guanosine 3',5'-bispyrophosphate
    • guanosine 3',5'-bis(diphosphate)
    • guanosine 3'-diphosphate 5'-diphosphate
    • magic spot
    • guanosine-5',3'-tetraphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(OP(=O)([O-])OP(=O)(O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP([O-])([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))" cannot be used as a page name in this wiki.




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