Difference between revisions of "Tiso gene 1537"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.12-RXN 2.4.2.12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nicotinamide_phosphor...")
(Created page with "Category:Gene == Gene Tiso_gene_1537 == * right end position: ** 1729 * transcription direction: ** POSITIVE * left end position: ** 149 * centisome position: ** 0.6363442...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.12-RXN 2.4.2.12-RXN] ==
+
== Gene Tiso_gene_1537 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 1729
−
* common name:
+
* transcription direction:
−
** nicotinamide_phosphoribosyltransferase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/2.4.2.12 EC-2.4.2.12]
+
** 149
 +
* centisome position:
 +
** 0.6363442   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.1.1.64-RXN]]
−
** 1 [[PRPP]][c] '''+''' 1 [[NIACINAMIDE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 5-phospho-α-D-ribose 1-diphosphate[c] '''+''' 1 nicotinamide[c] '''+''' 1 H+[c] '''=>''' 1 β-nicotinamide D-ribonucleotide[c] '''+''' 1 diphosphate[c]
+
** Source: [[orthology-esiliculosus]]
−
 
+
* Reaction: [[CARBOXYLESTERASE-RXN]]
−
== Genes associated with this reaction  ==
+
** Source: [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** Assignment: automated-name-match
−
* [[Tiso_gene_8186]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Reaction: [[RETINYL-PALMITATE-ESTERASE-RXN]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_8411]]
+
*** Assignment: automated-name-match
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[RXN-10711]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_8410]]
+
*** Assignment: automated-name-match
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
−
== Pathways  ==
+
* Reaction: [[RXN-10767]]
−
* [[NAD-BIOSYNTHESIS-III]], NAD biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=NAD-BIOSYNTHESIS-III NAD-BIOSYNTHESIS-III]
+
** Source: [[annotation-in-silico_annotation]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
*** Assignment: automated-name-match
−
== Reconstruction information  ==
+
** Source: [[orthology-esiliculosus]]
−
* [[orthology]]:
+
* Reaction: [[RXN-12252]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Assignment: automated-name-match
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
* Reaction: [[RXN-12575]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXNQT-4366]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-6857]]
 +
* [[PWY-6303]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=1729}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16149 16149]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=149}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01271 R01271]
+
{{#set: centisome position=0.6363442    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction associated=3.1.1.64-RXN|CARBOXYLESTERASE-RXN|RETINYL-PALMITATE-ESTERASE-RXN|RXN-10711|RXN-10767|RXN-12252|RXN-12575|RXNQT-4366}}
−
{{#set: common name=nicotinamide_phosphoribosyltransferase}}
+
{{#set: pathway associated=PWY-6857|PWY-6303}}
−
{{#set: ec number=EC-2.4.2.12}}
+
−
{{#set: gene associated=Tiso_gene_8186|Tiso_gene_8411|Tiso_gene_8410}}
+
−
{{#set: in pathway=NAD-BIOSYNTHESIS-III}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:13, 21 March 2018

Gene Tiso_gene_1537

  • right end position:
    • 1729
  • transcription direction:
    • POSITIVE
  • left end position:
    • 149
  • centisome position:
    • 0.6363442
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1537&oldid=46973"