Difference between revisions of "RXN1F-20"

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(Created page with "Category:Gene == Gene Tiso_gene_19352 == * left end position: ** 124 * transcription direction: ** POSITIVE * right end position: ** 854 * centisome position: ** 5.1861143...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] == * direction: ** LEFT-TO-RIGHT * common name: ** Magnesium chelatase, H subuni...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_19352 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] ==
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* left end position:
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* direction:
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** 124
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Magnesium chelatase, H subunit
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* right end position:
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** h_subunit_of_mg_chelatase
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** 854
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** magnesium_chelatase
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* centisome position:
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* ec number:
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** 5.1861143   
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** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN]]
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* With identifiers:
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** [[pantograph]]-[[esiliculosus]]
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** 1 [[WATER]][c] '''+''' 1 [[MG+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[ATP]][c] '''=>''' 3 [[PROTON]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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* [[R06859]]
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* With common name(s):
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** [[pantograph]]-[[synechocystis]]
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** 1 H2O[c] '''+''' 1 Mg2+[c] '''+''' 1 protoporphyrin IX[c] '''+''' 1 ATP[c] '''=>''' 3 H+[c] '''+''' 1 Mg-protoporphyrin[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
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* [[RXN-11046]]
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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* [[RXN-14177]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_11960]]
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* [[RXN-9235]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***automated-name-match
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-6708]]
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** Source: [[orthology-athaliana]]
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* [[PWY-5872]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-5870]]
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* Gene: [[Tiso_gene_5993]]
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* [[PWY-5857]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9870]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=124}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
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{{#set: right end position=854}}
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* LIGAND-RXN:
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{{#set: centisome position=5.1861143    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
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{{#set: reaction associated=2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN|R06859|RXN-11046|RXN-14177|RXN-9235}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-6708|PWY-5872|PWY-5870|PWY-5857}}
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{{#set: common name=Magnesium chelatase, H subunit}}
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{{#set: common name=h_subunit_of_mg_chelatase}}
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{{#set: common name=magnesium_chelatase}}
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{{#set: ec number=EC-6.6.1.1}}
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{{#set: gene associated=Tiso_gene_11960|Tiso_gene_5993|Tiso_gene_9870}}
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{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:15, 21 March 2018

Reaction RXN1F-20

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Magnesium chelatase, H subunit
    • h_subunit_of_mg_chelatase
    • magnesium_chelatase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1F-20&oldid=47280"