Difference between revisions of "RXN-18205"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9652 RXN-9652] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase ** polyket...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18205 RXN-18205] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9652 RXN-9652] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18205 RXN-18205] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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* common name:
 
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** 3-oxoacyl-synthase
 
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** polyketide_synthase
 
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* ec number:
 
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[Decanoyl-ACPs]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[CPD-19489]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPDQT-29]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 malonyl-CoA[c] '''+''' 1 a decanoyl-[acp][c] '''=>''' 1 coenzyme A[c] '''+''' 1 a 3-oxo-dodecanoyl-[acp][c] '''+''' 1 CO2[c]
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** 1 3-isopropyl-8-(methylthio)-2-oxooctanoate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 8-(methylthio)-2-oxooctanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
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* [[Tiso_gene_5939]]
 
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** IN-SILICO_ANNOTATION
 
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***EC-NUMBER
 
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** EXPERIMENTAL_ANNOTATION
 
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***EC-NUMBER
 
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* [[Tiso_gene_19302]]
 
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** [[pantograph]]-[[esiliculosus]]
 
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* [[Tiso_gene_13394]]
 
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** IN-SILICO_ANNOTATION
 
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***EC-NUMBER
 
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* [[Tiso_gene_14485]]
 
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** [[pantograph]]-[[esiliculosus]]
 
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* [[Tiso_gene_136]]
 
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** IN-SILICO_ANNOTATION
 
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***EC-NUMBER
 
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* [[Tiso_gene_10876]]
 
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** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
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* [[Tiso_gene_135]]
 
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** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
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* [[Tiso_gene_15991]]
 
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** [[pantograph]]-[[esiliculosus]]
 
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* [[Tiso_gene_500]]
 
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** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''10''' reactions found over '''30''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
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** Source: [[annotation-experimental_annotation]]
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*** [[esiliculosus]]
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*** Tool: [[pathwaytools]]
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* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: in pathway=PWYQT-4450}}
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{{#set: common name=polyketide_synthase}}
+
−
{{#set: ec number=EC-2.3.1.86}}
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−
{{#set: ec number=EC-2.3.1.85}}
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−
{{#set: ec number=EC-2.3.1.41}}
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−
{{#set: gene associated=Tiso_gene_5939|Tiso_gene_19302|Tiso_gene_13394|Tiso_gene_14485|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_135|Tiso_gene_15991|Tiso_gene_500}}
+
−
{{#set: in pathway=PWY-5994}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:16, 21 March 2018

Reaction RXN-18205

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-isopropyl-8-(methylthio)-2-oxooctanoate[c] + 1 H+[c] => 1 CO2[c] + 1 8-(methylthio)-2-oxooctanoate[c]

Genes associated with this reaction

Pathways

  • PWYQT-4450, aliphatic glucosinolate biosynthesis, side chain elongation cycle: PWYQT-4450
    • 10 reactions found over 30 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-18205&oldid=47370"