Difference between revisions of "SPERMIDINESYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE] == * smiles: ** C(OP([...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
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* smiles:
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* direction:
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** C(OP([O-])([O-])=O)C2(C(O)C(O)C(N1(C(N)=C(C(=O)NC(C([O-])=O)CC([O-])=O)N=C1))O2)
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** REVERSIBLE
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* inchi key:
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** InChIKey=NAQGHJTUZRHGAC-LBGUGVGYSA-J
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* common name:
 
* common name:
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** 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
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** spermidine_synthase
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* molecular weight:
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* ec number:
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** 450.255   
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** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
 
* Synonym(s):
 
* Synonym(s):
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** (S)-2-[5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate
 
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** 1-(5-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole
 
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** 5'-P-ribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
 
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** 5'-p-Ribosyl-4-(N-succinocarboxamide)-5-amino imidazole
 
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** 1-(5'-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole
 
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** SAICAR
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[SAICARSYN-RXN]]
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** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[PUTRESCINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[AIAL]]
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** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 putrescine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
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* [[AICARSYN-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_17803]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_16717]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_16718]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_17081]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* BIGG : 25aics
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266647 45266647]
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* LIGAND-RXN:
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* HMDB : HMDB00797
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** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C04823 C04823]
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** [http://www.uniprot.org/uniprot/P19623 P19623]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q57761 Q57761]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58443 58443]
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** [http://www.uniprot.org/uniprot/Q12074 Q12074]
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* METABOLIGHTS : MTBLC58443
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** [http://www.uniprot.org/uniprot/Q12455 Q12455]
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{{#set: smiles=C(OP([O-])([O-])=O)C2(C(O)C(O)C(N1(C(N)=C(C(=O)NC(C([O-])=O)CC([O-])=O)N=C1))O2)}}
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** [http://www.uniprot.org/uniprot/P09158 P09158]
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{{#set: inchi key=InChIKey=NAQGHJTUZRHGAC-LBGUGVGYSA-J}}
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** [http://www.uniprot.org/uniprot/O48660 O48660]
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{{#set: common name=5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole}}
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{{#set: direction=REVERSIBLE}}
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{{#set: molecular weight=450.255    }}
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{{#set: common name=spermidine_synthase}}
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{{#set: common name=(S)-2-[5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate|1-(5-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole|5'-P-ribosyl-4-(N-succinocarboxamide)-5-aminoimidazole|5'-p-Ribosyl-4-(N-succinocarboxamide)-5-amino imidazole|1-(5'-phosphoribosyl)-4-(N-succino-carboxamide)-5-aminoimidazole|SAICAR}}
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{{#set: ec number=EC-2.5.1.16}}
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{{#set: produced by=SAICARSYN-RXN}}
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{{#set: gene associated=Tiso_gene_17803|Tiso_gene_16717|Tiso_gene_16718|Tiso_gene_17081}}
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{{#set: consumed or produced by=AIAL|AICARSYN-RXN}}
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{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:16, 21 March 2018

Reaction SPERMIDINESYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • spermidine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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