Difference between revisions of "RXN0-901"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15511 RXN-15511] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutase ** bis...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.17....")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15511 RXN-15511] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-901 RXN0-901] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
+
* ec number:
−
** phosphoglycerate_mutase
+
** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
−
** bisphosphoglycerate-dependent_phosphoglycerate_mutase
+
−
** ORF
+
−
** plastid_phosphoglycerate_mutase_protein
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[23-DIPHOSPHOGLYCERATE]][c] '''+''' 1 [[Protein-Histidines]][c] '''<=>''' 1 [[Protein-pi-phospho-L-histidines]][c] '''+''' 1 [[G3P]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[XANTHINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[URATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2,3-diphospho-D-glycerate[c] '''+''' 1 a [protein]-L-histidine[c] '''<=>''' 1 a [protein]-N&pi;-phospho-L-histidine[c] '''+''' 1 3-phospho-D-glycerate[c]
+
** 1 H2O[c] '''+''' 1 NAD+[c] '''+''' 1 xanthine[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 urate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9922]]
+
* Gene: [[Tiso_gene_11775]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_16271]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9923]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2841]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14664]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14530]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7201]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6405]], Rapoport-Luebering glycolytic shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6405 PWY-6405]
+
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
 +
** '''4''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''7''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6999]], theophylline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6999 PWY-6999]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6538 PWY-6538]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16669 16669]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q62637 Q62637]
 +
** [http://www.uniprot.org/uniprot/P22811 P22811]
 +
** [http://www.uniprot.org/uniprot/Q12553 Q12553]
 +
** [http://www.uniprot.org/uniprot/P08793 P08793]
 +
** [http://www.uniprot.org/uniprot/P10351 P10351]
 +
** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
 +
** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
 +
** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
 +
** [http://www.uniprot.org/uniprot/P47990 P47990]
 +
** [http://www.uniprot.org/uniprot/P47989 P47989]
 +
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=phosphoglycerate_mutase}}
+
{{#set: ec number=EC-1.17.1.4}}
−
{{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}}
+
{{#set: gene associated=Tiso_gene_11775}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-6607|SALVADEHYPOX-PWY|P164-PWY|PWY-6596|PWY-5497|PWY-6606|PWY-6999|PWY-6608|PWY-5695|PWY-6538}}
−
{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=Tiso_gene_9922|Tiso_gene_16271|Tiso_gene_9923|Tiso_gene_2841|Tiso_gene_14664|Tiso_gene_2365|Tiso_gene_14530|Tiso_gene_7201}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
−
{{#set: in pathway=PWY-6405}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:17, 21 March 2018

Reaction RXN0-901

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 NAD+[c] + 1 xanthine[c] <=> 1 H+[c] + 1 NADH[c] + 1 urate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 3 reactions found over 4 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 7 reactions found over 24 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6999, theophylline degradation: PWY-6999
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5695, urate biosynthesis/inosine 5'-phosphate degradation: PWY-5695
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6538, caffeine degradation III (bacteria, via demethylation): PWY-6538
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-901&oldid=47494"