Difference between revisions of "HOMO-I-CIT"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMO-I-CIT HOMO-I-CIT] == * smiles: ** C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-] * common name: **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMO-I-CIT HOMO-I-CIT] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-]
 
* common name:
 
* common name:
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** d-3-phosphoglycerate_dehydrogenase
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** (1R,2S)-homoisocitrate
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** ORF
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* inchi key:
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* ec number:
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** InChIKey=OEJZZCGRGVFWHK-WVZVXSGGSA-K
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** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
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* molecular weight:
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** 203.128   
 
* Synonym(s):
 
* Synonym(s):
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** (-)-threo-isohomocitrate
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** (-)-1-hydroxy-1,2,4-butanetricarboxylate
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** homo-I-cit
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** 1-hydroxy-1,2,4-butanetricarboxylate
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** 2-hydroxy-3-carboxyadipate
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** homo-iso-citrate
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** 1-(R)-hydroxy-2-(S)-1,2,4-butanetricarboxylic acid
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** 1-hydroxybutane-1,2,4-tricarboxylate
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** (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate
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** homoisocitrate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[HOMOACONITATE-HYDRATASE-RXN]]
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** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
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* [[RXN-13722]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6223]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15687]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_17123]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18904]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15686]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6224]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5459812 5459812]
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* LIGAND-RXN:
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* CHEMSPIDER:
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** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
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** [http://www.chemspider.com/Chemical-Structure.4573580.html 4573580]
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* UNIPROT:
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q58424 Q58424]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15404 15404]
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** [http://www.uniprot.org/uniprot/P43885 P43885]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P35136 P35136]
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** [http://www.genome.jp/dbget-bin/www_bget?C05662 C05662]
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** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
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{{#set: smiles=C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
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{{#set: common name=(1R,2S)-homoisocitrate}}
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** [http://www.uniprot.org/uniprot/P40510 P40510]
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{{#set: inchi key=InChIKey=OEJZZCGRGVFWHK-WVZVXSGGSA-K}}
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** [http://www.uniprot.org/uniprot/P40054 P40054]
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{{#set: molecular weight=203.128    }}
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** [http://www.uniprot.org/uniprot/O49485 O49485]
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{{#set: common name=(-)-threo-isohomocitrate|(-)-1-hydroxy-1,2,4-butanetricarboxylate|homo-I-cit|1-hydroxy-1,2,4-butanetricarboxylate|2-hydroxy-3-carboxyadipate|homo-iso-citrate|1-(R)-hydroxy-2-(S)-1,2,4-butanetricarboxylic acid|1-hydroxybutane-1,2,4-tricarboxylate|(1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate|homoisocitrate}}
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** [http://www.uniprot.org/uniprot/P87228 P87228]
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{{#set: reversible reaction associated=HOMOACONITATE-HYDRATASE-RXN|RXN-13722}}
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** [http://www.uniprot.org/uniprot/O04130 O04130]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.1.1.95}}
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{{#set: gene associated=Tiso_gene_6223|Tiso_gene_15687|Tiso_gene_17123|Tiso_gene_18904|Tiso_gene_15686|Tiso_gene_6224}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:17, 21 March 2018

Metabolite HOMO-I-CIT

  • smiles:
    • C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-]
  • common name:
    • (1R,2S)-homoisocitrate
  • inchi key:
    • InChIKey=OEJZZCGRGVFWHK-WVZVXSGGSA-K
  • molecular weight:
    • 203.128
  • Synonym(s):
    • (-)-threo-isohomocitrate
    • (-)-1-hydroxy-1,2,4-butanetricarboxylate
    • homo-I-cit
    • 1-hydroxy-1,2,4-butanetricarboxylate
    • 2-hydroxy-3-carboxyadipate
    • homo-iso-citrate
    • 1-(R)-hydroxy-2-(S)-1,2,4-butanetricarboxylic acid
    • 1-hydroxybutane-1,2,4-tricarboxylate
    • (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate
    • homoisocitrate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(CC(=O)[O-])C(C(=O)[O-])C(O)C(=O)[O-" cannot be used as a page name in this wiki.



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