Difference between revisions of "6.3.2.25-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.2.25-RXN 6.3.2.25-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** tubulin-tyrosine_liga...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.2.25-RXN 6.3.2.25-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** tubulin-tyrosine_ligase
−
** malonyl-_:acp_transacylase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/6.3.2.25 EC-6.3.2.25]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.39 EC-2.3.1.39]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MALONYL-COA]][c] '''+''' 1 [[ACP]][c] '''=>''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[Detyrosinated-alpha--tubulins]][c] '''+''' 1 [[TYR]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Alpha-tubulins]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 malonyl-CoA[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''=>''' 1 a malonyl-[acp][c] '''+''' 1 coenzyme A[c]
+
** 1 detyrosinated α-tubulin[c] '''+''' 1 L-tyrosine[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 α-tubulin[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19309]]
+
* Gene: [[Tiso_gene_9268]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_17589]]
−
* [[Tiso_gene_135]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_17234]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_18460]]
+
* Gene: [[Tiso_gene_15094]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_5828]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_20330]]
−
* [[Tiso_gene_10876]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_15093]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_136]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_10440]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_14575]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_10591]]
−
* [[Tiso_gene_13394]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_3379]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4516]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17450]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6799 PWY-6799]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
* [[manual]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[primary_network]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04730 R04730]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P72391 P72391]
+
** [http://www.uniprot.org/uniprot/P38160 P38160]
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
−
** [http://www.uniprot.org/uniprot/O34825 O34825]
+
−
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
+
−
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
+
−
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
+
−
** [http://www.uniprot.org/uniprot/O24916 O24916]
+
−
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
+
−
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
+
−
** [http://www.uniprot.org/uniprot/P43712 P43712]
+
−
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
+
−
** [http://www.uniprot.org/uniprot/O67041 O67041]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
+
−
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
+
−
** [http://www.uniprot.org/uniprot/P63458 P63458]
+
−
** [http://www.uniprot.org/uniprot/O84241 O84241]
+
−
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
+
−
** [http://www.uniprot.org/uniprot/P71019 P71019]
+
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
+
−
** [http://www.uniprot.org/uniprot/P73242 P73242]
+
−
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
+
−
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
+
−
** [http://www.uniprot.org/uniprot/O54437 O54437]
+
−
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
+
−
** [http://www.uniprot.org/uniprot/O13698 O13698]
+
−
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
+
−
** [http://www.uniprot.org/uniprot/O69476 O69476]
+
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
+
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=tubulin-tyrosine_ligase}}
−
{{#set: common name=malonyl-_:acp_transacylase}}
+
{{#set: ec number=EC-6.3.2.25}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: gene associated=Tiso_gene_9268|Tiso_gene_17589|Tiso_gene_17234|Tiso_gene_15094|Tiso_gene_5828|Tiso_gene_20330|Tiso_gene_15093|Tiso_gene_10440|Tiso_gene_14575|Tiso_gene_10591|Tiso_gene_3379|Tiso_gene_4516|Tiso_gene_17450}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-2.3.1.39}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=Tiso_gene_19309|Tiso_gene_135|Tiso_gene_18460|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: in pathway=PWY-6799|PWY-7388|PWY-4381}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:18, 21 March 2018

Reaction 6.3.2.25-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tubulin-tyrosine_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=6.3.2.25-RXN&oldid=47580"