Difference between revisions of "GDP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP GDP] == * smiles: ** C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP GDP] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/6.2.1 EC-6.2.1]
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** GDP
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* inchi key:
 +
** InChIKey=QGWNDRXFNXRZMB-UUOKFMHZSA-K
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* molecular weight:
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** 440.179   
 
* Synonym(s):
 
* Synonym(s):
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** ppG
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** guanosine-5'-diphosphate
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** guanosine-diphosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[GDPPYPHOSKIN-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CPD-730]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-11517]][c] '''+''' 1 [[PPI]][c]
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* [[GDPKIN-RXN]]
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* With common name(s):
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* [[ATGD]]
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoate[c] '''=>''' 1 AMP[c] '''+''' 1 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA[c] '''+''' 1 diphosphate[c]
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* [[GDPA]]
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* [[RXN0-748]]
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== Genes associated with this reaction  ==
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* [[GTPOP]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GUANOSINE-DIPHOSPHATASE-RXN]]
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* [[Tiso_gene_12275]]
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* [[GDPREDUCT-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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== Reaction(s) known to produce the compound ==
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* [[Tiso_gene_14183]]
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* [[RXN-5464]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-8988]]
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== Pathways  ==
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* [[RXN-14074]]
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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* [[AGPTf]]
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** '''15''' reactions found over '''19''' reactions in the full pathway
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* [[AGPT]]
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== Reconstruction information  ==
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* [[RXN-5462]]
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* [[orthology]]:
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* [[2.4.1.83-RXN]]
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** [[pantograph]]:
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* [[RXN-5463]]
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*** [[esiliculosus]]
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* [[2.4.1.142-RXN]]
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* [[RXN-16602]]
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* [[RXN0-5462]]
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* [[PPGPPSYN-RXN]]
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* [[GTUP]]
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* [[ADENYLOSUCCINATE-SYNTHASE-RXN]]
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* [[GUANYL-KIN-RXN]]
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* [[FE2GTPabc]]
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* [[GTPA]]
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* [[GTCY]]
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== Reaction(s) of unknown directionality ==
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* [[2.4.1.232-RXN]]
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* [[2.4.1.32-RXN]]
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* [[RXN-14117]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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* [[SUCL_gdp_m]]
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* [[URKI-RXN]]
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* [[MANNPGUANYLTRANGDP-RXN]]
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* [[GBDP]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* CAS : 146-91-8
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** [http://www.genome.jp/dbget-bin/www_bget?R07887 R07887]
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* BIGG : gdp
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: ec number=EC-6.2.1}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=21604868 21604868]
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{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
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* HMDB : HMDB01201
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{{#set: in pathway=PWY-735}}
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* LIGAND-CPD:
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{{#set: reconstruction category=orthology}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00035 C00035]
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{{#set: reconstruction tool=pantograph}}
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* CHEMSPIDER:
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{{#set: reconstruction source=esiliculosus}}
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** [http://www.chemspider.com/Chemical-Structure.10239187.html 10239187]
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58189 58189]
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* METABOLIGHTS : MTBLC58189
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{{#set: smiles=C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))}}
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{{#set: common name=GDP}}
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{{#set: inchi key=InChIKey=QGWNDRXFNXRZMB-UUOKFMHZSA-K}}
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{{#set: molecular weight=440.179    }}
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{{#set: common name=ppG|guanosine-5'-diphosphate|guanosine-diphosphate}}
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{{#set: consumed by=GDPPYPHOSKIN-RXN|GDPKIN-RXN|ATGD|GDPA|RXN0-748|GTPOP|GUANOSINE-DIPHOSPHATASE-RXN|GDPREDUCT-RXN}}
 +
{{#set: produced by=RXN-5464|RXN-8988|RXN-14074|AGPTf|AGPT|RXN-5462|2.4.1.83-RXN|RXN-5463|2.4.1.142-RXN|RXN-16602|RXN0-5462|PPGPPSYN-RXN|GTUP|ADENYLOSUCCINATE-SYNTHASE-RXN|GUANYL-KIN-RXN|FE2GTPabc|GTPA|GTCY}}
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{{#set: reversible reaction associated=2.4.1.232-RXN|2.4.1.32-RXN|RXN-14117|SUCCINATE--COA-LIGASE-GDP-FORMING-RXN|SUCL_gdp_m|URKI-RXN|MANNPGUANYLTRANGDP-RXN|GBDP}}

Latest revision as of 20:19, 21 March 2018

Metabolite GDP

  • smiles:
    • C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
  • common name:
    • GDP
  • inchi key:
    • InChIKey=QGWNDRXFNXRZMB-UUOKFMHZSA-K
  • molecular weight:
    • 440.179
  • Synonym(s):
    • ppG
    • guanosine-5'-diphosphate
    • guanosine-diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 146-91-8
  • BIGG : gdp
  • PUBCHEM:
  • HMDB : HMDB01201
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC58189
"C(OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))" cannot be used as a page name in this wiki.




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