Difference between revisions of "Tiso gene 10738"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAMPYR-RXN PSERTRANSAMPYR-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosp...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10738 == * right end position: ** 6551 * transcription direction: ** POSITIVE * left end position: ** 4397 * centisome position: ** 52.7471...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAMPYR-RXN PSERTRANSAMPYR-RXN] ==
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== Gene Tiso_gene_10738 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 6551
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** phosphoserine_aminotransferase
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* left end position:
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* ec number:
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** 4397
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** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
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* centisome position:
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** 52.74712   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ALKAPHOSPHA-RXN]]
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** 1 [[GLT]][c] '''+''' 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 L-glutamate[c] '''+''' 1 (3R)-3-hydroxy-2-oxo-4 phosphonooxybutanoate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 4-phospho-hydroxy-L-threonine[c]
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* Reaction: [[RXN-5822]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-8748]]
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* [[Tiso_gene_15686]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-5491]]
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***EC-NUMBER
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* [[PWY-5083]]
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** [[pantograph]]-[[esiliculosus]]
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* [[NADPHOS-DEPHOS-PWY]]
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* [[Tiso_gene_17123]]
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* [[NAD-BIOSYNTHESIS-II]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6551}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16573 16573]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4397}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
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{{#set: centisome position=52.74712    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=ALKAPHOSPHA-RXN|RXN-5822|RXN-8748}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY-5491|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
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{{#set: common name=phosphoserine_aminotransferase}}
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{{#set: ec number=EC-2.6.1.52}}
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{{#set: gene associated=Tiso_gene_15686|Tiso_gene_17123}}
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{{#set: in pathway=PYRIDOXSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:21, 21 March 2018

Gene Tiso_gene_10738

  • right end position:
    • 6551
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4397
  • centisome position:
    • 52.74712
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10738&oldid=41068"