Difference between revisions of "Tiso gene 5996"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Gene == Gene Tiso_gene_5996 == * right end position: ** 11427 * transcription direction: ** POSITIVE * left end position: ** 9055 * centisome position: ** 55.6033...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN] ==
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== Gene Tiso_gene_5996 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11427
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.3.5.2 EC-1.3.5.2]
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** 9055
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* centisome position:
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** 55.603313   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4-NITROPHENYLPHOSPHATASE-RXN]]
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** 1 [[ETR-Quinones]][c] '''+''' 1 [[DI-H-OROTATE]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[OROTATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 an electron-transfer quinone[c] '''+''' 1 (S)-dihydroorotate[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 orotate[c]
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* Reaction: [[ACID-PHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-5822]]
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* [[Tiso_gene_4735]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_5280]]
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* [[PWY-6348]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5083]]
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== Pathways  ==
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* [[NADPHOS-DEPHOS-PWY]]
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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* [[NAD-BIOSYNTHESIS-II]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=11427}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18073 18073]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=9055}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01868 R01868]
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{{#set: centisome position=55.603313    }}
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* UNIPROT:
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{{#set: reaction associated=4-NITROPHENYLPHOSPHATASE-RXN|ACID-PHOSPHATASE-RXN|RXN-5822}}
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** [http://www.uniprot.org/uniprot/O76140 O76140]
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{{#set: pathway associated=PWY-6348|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.3.5.2}}
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{{#set: gene associated=Tiso_gene_4735|Tiso_gene_5280}}
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{{#set: in pathway=PWY-5686}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:20, 21 March 2018

Gene Tiso_gene_5996

  • right end position:
    • 11427
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9055
  • centisome position:
    • 55.603313
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5996&oldid=47956"