Difference between revisions of "1.2.4.4-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NODOx NODOx] == * direction: ** LEFT-TO-RIGHT * common name: ** nitric oxide, NADH2:oxygen oxidored...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.4.4-RXN 1.2.4.4-RXN] == * direction: ** REVERSIBLE * common name: ** 3-methyl-2-oxobutanoate_de...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.4.4-RXN 1.2.4.4-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** REVERSIBLE |
* common name: | * common name: | ||
− | ** | + | ** 3-methyl-2-oxobutanoate_dehydrogenase |
+ | ** 2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.2.4.4 EC-1.2.4.4] | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** | + | ** 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
* With common name(s): | * With common name(s): | ||
− | ** | + | ** 1 an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H+[c] '''<=>''' 1 an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylpropanoyl]dihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_11793]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[Tiso_gene_3260]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_18084]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
== Pathways == | == Pathways == | ||
+ | * [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5046 PWY-5046] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]]: | + | * Category: [[orthology]] |
− | ** [[pantograph]]: | + | ** Source: [[orthology-esiliculosus]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * LIGAND-RXN: |
− | {{#set: common name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701] |
− | {{#set: gene associated= | + | * UNIPROT: |
− | {{#set: in pathway=}} | + | ** [http://www.uniprot.org/uniprot/P21839 P21839] |
− | {{#set: reconstruction category=orthology}} | + | ** [http://www.uniprot.org/uniprot/P21953 P21953] |
− | {{#set: reconstruction | + | ** [http://www.uniprot.org/uniprot/P37940 P37940] |
− | {{#set: reconstruction | + | ** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54] |
+ | ** [http://www.uniprot.org/uniprot/P37941 P37941] | ||
+ | ** [http://www.uniprot.org/uniprot/P11178 P11178] | ||
+ | ** [http://www.uniprot.org/uniprot/P12694 P12694] | ||
+ | ** [http://www.uniprot.org/uniprot/P09061 P09061] | ||
+ | ** [http://www.uniprot.org/uniprot/P09060 P09060] | ||
+ | ** [http://www.uniprot.org/uniprot/P11960 P11960] | ||
+ | ** [http://www.uniprot.org/uniprot/O84344 O84344] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2] | ||
+ | ** [http://www.uniprot.org/uniprot/P35738 P35738] | ||
+ | ** [http://www.uniprot.org/uniprot/P50136 P50136] | ||
+ | ** [http://www.uniprot.org/uniprot/O48615 O48615] | ||
+ | ** [http://www.uniprot.org/uniprot/O03849 O03849] | ||
+ | ** [http://www.uniprot.org/uniprot/Q53592 Q53592] | ||
+ | ** [http://www.uniprot.org/uniprot/Q53593 Q53593] | ||
+ | ** [http://www.uniprot.org/uniprot/O82450 O82450] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=3-methyl-2-oxobutanoate_dehydrogenase}} | ||
+ | {{#set: common name=2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial}} | ||
+ | {{#set: ec number=EC-1.2.4.4}} | ||
+ | {{#set: gene associated=Tiso_gene_11793|Tiso_gene_3260|Tiso_gene_18084}} | ||
+ | {{#set: in pathway=PWY-5046}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 20:20, 21 March 2018
Contents
Reaction 1.2.4.4-RXN
- direction:
- REVERSIBLE
- common name:
- 3-methyl-2-oxobutanoate_dehydrogenase
- 2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 BCAA-dehydrogenase-lipoyl[c] + 1 2-KETO-ISOVALERATE[c] + 1 PROTON[c] <=> 1 BCAA-dehydrogenase-2MP-DH-lipoyl[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] + 1 3-methyl-2-oxobutanoate[c] + 1 H+[c] <=> 1 an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylpropanoyl]dihydrolipoyl-L-lysine[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_11793
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_3260
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_18084
- Source: orthology-esiliculosus
Pathways
- PWY-5046, 2-oxoisovalerate decarboxylation to isobutanoyl-CoA: PWY-5046
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- LIGAND-RXN:
- UNIPROT: