Difference between revisions of "Tiso gene 7285"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11917 RXN-11917] == * direction: ** LEFT-TO-RIGHT * common name: ** 7-methyl-3-oxo-6-octenoyl-C...")
(Created page with "Category:Gene == Gene Tiso_gene_7285 == * right end position: ** 7400 * transcription direction: ** POSITIVE * left end position: ** 4564 * centisome position: ** 40.25401...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11917 RXN-11917] ==
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== Gene Tiso_gene_7285 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7400
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* common name:
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* transcription direction:
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** 7-methyl-3-oxo-6-octenoyl-CoA:acetyl-CoA C-acyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
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** 4564
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* centisome position:
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** 40.254013   
 
* Synonym(s):
 
* Synonym(s):
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** 7-methyl-3-oxo-6-octenoyl-CoA thiolase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[FUMARATE-REDUCTASE-NADH-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[CPD-12897]][c] '''=>''' 1 [[CPD-12902]][c] '''+''' 1 [[ACETYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 coenzyme A[c] '''+''' 1 7-methyl-3-oxooct-6-enoyl-CoA[c] '''=>''' 1 5-methylhex-4-enoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[L-ASPARTATE-OXID-RXN]]
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* [[Tiso_gene_16181]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[R00357]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-synechocystis]]
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== Pathways  ==
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== Pathways associated ==
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* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
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* [[PWY-5316]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7342]]
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== Reconstruction information  ==
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* [[PYRIDNUCSYN-PWY]]
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=7400}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08091 R08091]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=4564}}
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{{#set: common name=7-methyl-3-oxo-6-octenoyl-CoA:acetyl-CoA C-acyltransferase}}
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{{#set: centisome position=40.254013    }}
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{{#set: ec number=EC-2.3.1}}
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{{#set: reaction associated=FUMARATE-REDUCTASE-NADH-RXN|L-ASPARTATE-OXID-RXN|R00357}}
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{{#set: common name=7-methyl-3-oxo-6-octenoyl-CoA thiolase}}
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{{#set: pathway associated=PWY-5316|PWY-7342|PYRIDNUCSYN-PWY}}
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{{#set: gene associated=Tiso_gene_16181}}
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{{#set: in pathway=PWY-6672}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Latest revision as of 21:21, 21 March 2018

Gene Tiso_gene_7285

  • right end position:
    • 7400
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4564
  • centisome position:
    • 40.254013
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7285&oldid=48069"