Difference between revisions of "Tiso gene 19480"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16415 RXN-16415] == * direction: ** REVERSIBLE * common name: ** polyketide_synthase ** long_ch...")
(Created page with "Category:Gene == Gene Tiso_gene_19480 == * right end position: ** 2116 * transcription direction: ** POSITIVE * left end position: ** 87 * centisome position: ** 3.8007863...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16415 RXN-16415] ==
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== Gene Tiso_gene_19480 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2116
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** long_chain_acyl-_synthetase
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* left end position:
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** acyl-_synthetase
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** 87
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** ORF
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* centisome position:
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* ec number:
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** 3.8007863   
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[G6PI]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Very-long-chain-fatty-acids]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[VERY-LONG-CHAIN-FATTY-ACYL-COA]][c] '''+''' 1 [[AMP]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]]
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 a very-long-chain fatty acid[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a very long chain fatty acyl-CoA[c] '''+''' 1 AMP[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[PGIA]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[PGIAh]]
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* [[Tiso_gene_7855]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[PGIB]]
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***EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_4191]]
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* Reaction: [[PGIBh]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[PGLUCISOM-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_348]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[R00771]]
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***EC-NUMBER
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** Source: [[orthology-synechocystis]]
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* [[Tiso_gene_9394]]
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* Reaction: [[RXN-13720]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[RXN-6182]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_10876]]
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* [[RUMP-PWY]]
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** IN-SILICO_ANNOTATION
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* [[GLYCOLYSIS]]
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***EC-NUMBER
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* [[PWY-3801]]
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* [[Tiso_gene_13394]]
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* [[PWY-7385]]
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** IN-SILICO_ANNOTATION
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* [[P124-PWY]]
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***EC-NUMBER
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* [[PWY-6142]]
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* [[Tiso_gene_135]]
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* [[PWY-5659]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6981]]
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***EC-NUMBER
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* [[P341-PWY]]
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* [[Tiso_gene_500]]
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* [[GLUCONEO-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7347]]
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***EC-NUMBER
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* [[PWY66-399]]
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* [[Tiso_gene_136]]
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* [[SUCSYN-PWY]]
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** IN-SILICO_ANNOTATION
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* [[UDPNAGSYN-PWY]]
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***EC-NUMBER
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* [[PWY-621]]
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== Pathways  ==
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* [[PWY-622]]
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== Reconstruction information  ==
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* [[PWY-5054]]
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* [[annotation]]:
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* [[PWY-6992]]
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** [[pathwaytools]]:
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* [[ANAGLYCOLYSIS-PWY]]
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*** [[experimental_annotation]]
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* [[PWY-5384]]
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*** [[in-silico_annotation]]
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* [[PWY-7238]]
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* [[PWY-5514]]
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* [[P122-PWY]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: right end position=2116}}
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{{#set: common name=polyketide_synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: left end position=87}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: centisome position=3.8007863    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=G6PI|GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN|PGIA|PGIAh|PGIB|PGIBh|PGLUCISOM-RXN|R00771|RXN-13720|RXN-6182}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: pathway associated=RUMP-PWY|GLYCOLYSIS|PWY-3801|PWY-7385|P124-PWY|PWY-6142|PWY-5659|PWY-6981|P341-PWY|GLUCONEO-PWY|PWY-7347|PWY66-399|SUCSYN-PWY|UDPNAGSYN-PWY|PWY-621|PWY-622|PWY-5054|PWY-6992|ANAGLYCOLYSIS-PWY|PWY-5384|PWY-7238|PWY-5514|P122-PWY}}
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{{#set: gene associated=Tiso_gene_7855|Tiso_gene_4191|Tiso_gene_348|Tiso_gene_9394|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_500|Tiso_gene_136}}
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−
{{#set: in pathway=}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_19480

  • right end position:
    • 2116
  • transcription direction:
    • POSITIVE
  • left end position:
    • 87
  • centisome position:
    • 3.8007863
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19480&oldid=48195"