Difference between revisions of "RXNI-2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16402 RXN-16402] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNI-2 RXNI-2] == * direction: ** REVERSIBLE * common name: ** succinyl-_:3-ketoacid-coenzyme_a_tra...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16402 RXN-16402] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNI-2 RXNI-2] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** succinyl-_:3-ketoacid-coenzyme_a_transferase_mitochondrial
−
** long_chain_acyl-_synthetase
+
−
** ORF
+
−
** acyl-_synthetase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/2.8.3.5 EC-2.8.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[18-HYDROXYOLEATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-17370]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[3-KETOBUTYRATE]][c] '''+''' 1 [[SUC-COA]][c] '''<=>''' 1 [[SUC]][c] '''+''' 1 [[ACETOACETYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 18-hydroxyoleate[c] '''=>''' 1 AMP[c] '''+''' 1 18-hydroxyoleoyl-CoA[c] '''+''' 1 diphosphate[c]
+
** 1 acetoacetate[c] '''+''' 1 succinyl-CoA[c] '''<=>''' 1 succinate[c] '''+''' 1 acetoacetyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_136]]
+
* Gene: [[Tiso_gene_6754]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10876]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
−
* [[Tiso_gene_9394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_348]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4191]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7855]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
+
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=polyketide_synthase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25480 25480]
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
* LIGAND-RXN:
−
{{#set: common name=ORF}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00410 R00410]
−
{{#set: common name=acyl-_synthetase}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: common name=succinyl-_:3-ketoacid-coenzyme_a_transferase_mitochondrial}}
−
{{#set: gene associated=Tiso_gene_136|Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_348|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_4191|Tiso_gene_135|Tiso_gene_7855}}
+
{{#set: ec number=EC-2.8.3.5}}
−
{{#set: in pathway=PWY-6733}}
+
{{#set: gene associated=Tiso_gene_6754}}
 +
{{#set: in pathway=REDCITCYC|PWY66-368}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 21:23, 21 March 2018

Reaction RXNI-2

  • direction:
    • REVERSIBLE
  • common name:
    • succinyl-_:3-ketoacid-coenzyme_a_transferase_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 6 reactions found over 9 reactions in the full pathway
  • PWY66-368, ketolysis: PWY66-368
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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