Difference between revisions of "Tiso gene 10254"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN] == * direction:...")
(Created page with "Category:Gene == Gene Tiso_gene_10254 == * right end position: ** 8475 * transcription direction: ** NEGATIVE * left end position: ** 6520 * centisome position: ** 75.0806...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN] ==
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== Gene Tiso_gene_10254 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 8475
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* common name:
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* transcription direction:
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** acetylornithine_aminotransferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.6.1.44 EC-2.6.1.44]
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** 6520
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* centisome position:
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** 75.08061   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12720]]
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** 1 [[GLYOX]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''<=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[GLY]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 glyoxylate[c] '''+''' 1 L-alanine[c] '''<=>''' 1 pyruvate[c] '''+''' 1 glycine[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* Reaction: [[SULFATE-ADENYLYLTRANS-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_11231]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-athaliana]]
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***EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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== Pathways associated ==
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6932]]
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* [[Tiso_gene_6134]]
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* [[DISSULFRED-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5340]]
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* [[Tiso_gene_5726]]
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* [[PWY-5278]]
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** [[pantograph]]-[[athaliana]]
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* [[SULFMETII-PWY]]
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== Pathways  ==
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* [[PWY-6683]]
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* [[GLYSYN-ALA-PWY]], glycine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-ALA-PWY GLYSYN-ALA-PWY]
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* [[P224-PWY]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8475}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24248 24248]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6520}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00369 R00369]
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{{#set: centisome position=75.08061    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-12720|SULFATE-ADENYLYLTRANS-RXN}}
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** [http://www.uniprot.org/uniprot/P31029 P31029]
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{{#set: pathway associated=PWY-6932|DISSULFRED-PWY|PWY-5340|PWY-5278|SULFMETII-PWY|PWY-6683|P224-PWY}}
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** [http://www.uniprot.org/uniprot/P31030 P31030]
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** [http://www.uniprot.org/uniprot/P41689 P41689]
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** [http://www.uniprot.org/uniprot/Q94055 Q94055]
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** [http://www.uniprot.org/uniprot/Q56YA5 Q56YA5]
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** [http://www.uniprot.org/uniprot/P21549 P21549]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=acetylornithine_aminotransferase}}
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{{#set: ec number=EC-2.6.1.44}}
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{{#set: gene associated=Tiso_gene_11231|Tiso_gene_6134|Tiso_gene_5726}}
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{{#set: in pathway=GLYSYN-ALA-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:23, 21 March 2018

Gene Tiso_gene_10254

  • right end position:
    • 8475
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 6520
  • centisome position:
    • 75.08061
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10254&oldid=48414"