Difference between revisions of "Tiso gene 16879"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2.1...")
(Created page with "Category:Gene == Gene Tiso_gene_16879 == * right end position: ** 2905 * transcription direction: ** POSITIVE * left end position: ** 349 * centisome position: ** 8.583374...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2425 RXN-2425] ==
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== Gene Tiso_gene_16879 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2905
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
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** POSITIVE
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* left end position:
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** 349
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* centisome position:
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** 8.583374   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACETYLORNDEACET-RXN]]
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** 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-23-DEHYDROADIPYL-COA]][c]
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** Source: [[orthology-athaliana]]
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* With common name(s):
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** Source: [[orthology-esiliculosus]]
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** 1 (3S)-hydroxyadipyl-CoA[c] '''<=>''' 1 H2O[c] '''+''' 1 trans-2,3-dehydroadipyl-coA[c]
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* Reaction: [[AMINOACYLASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-13684]]
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* [[Tiso_gene_5857]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_14257]]
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* [[GLUTORN-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-1361]], benzoyl-CoA degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1361 PWY-1361]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY0-321]], phenylacetate degradation I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-321 PWY0-321]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2905}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34863 34863]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=349}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06942 R06942]
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{{#set: centisome position=8.583374    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=ACETYLORNDEACET-RXN|AMINOACYLASE-RXN|RXN-13684}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: pathway associated=GLUTORN-PWY}}
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_14257}}
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{{#set: in pathway=PWY-1361|PWY0-321}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_16879

  • right end position:
    • 2905
  • transcription direction:
    • POSITIVE
  • left end position:
    • 349
  • centisome position:
    • 8.583374
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16879&oldid=48432"