Difference between revisions of "PYRIMSYN3-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_2447 == * left end position: ** 8 * transcription direction: ** POSITIVE * right end position: ** 4580 * centisome position: ** 4.122648800...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphomethylpyrimi...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_2447 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
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* left end position:
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* direction:
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** 8
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** phosphomethylpyrimidine_kinase
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* right end position:
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** thiamine_monophosphate_synthase
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** 4580
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7]
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** 4.122648800e-2
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[ATP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[ADP]][c]
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***ec-number
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* With common name(s):
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** 1 ATP[c] '''+''' 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''=>''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 ADP[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-12195]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_2159]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-12196]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_16224]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN0-5462]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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* Gene: [[Tiso_gene_17192]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[PWY-7184]]
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* Gene: [[Tiso_gene_2160]]
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* [[PWY-7198]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6545]]
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*** Assignment: EC-NUMBER
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* [[PWY-7210]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=8}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
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{{#set: right end position=4580}}
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* LIGAND-RXN:
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{{#set: centisome position=4.122648800e-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
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** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
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** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
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** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphomethylpyrimidine_kinase}}
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{{#set: common name=thiamine_monophosphate_synthase}}
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{{#set: ec number=EC-2.7.4.7}}
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{{#set: gene associated=Tiso_gene_2159|Tiso_gene_16224|Tiso_gene_17192|Tiso_gene_2160}}
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{{#set: in pathway=PWY-6910|PWY-7282|PWY-6890|PWY-7356|PWY-7357}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:24, 21 March 2018

Reaction PYRIMSYN3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphomethylpyrimidine_kinase
    • thiamine_monophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6910, hydroxymethylpyrimidine salvage: PWY-6910
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: PWY-6890
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast): PWY-7356
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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