Difference between revisions of "Tiso gene 14474"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.64-RXN 2.5.1.64-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-succinyl-5-enolpyru...")
(Created page with "Category:Gene == Gene Tiso_gene_14474 == * right end position: ** 1585 * transcription direction: ** POSITIVE * left end position: ** 261 * centisome position: ** 4.636702...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.64-RXN 2.5.1.64-RXN] ==
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== Gene Tiso_gene_14474 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1585
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* common name:
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* transcription direction:
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** 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate_synthase
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** POSITIVE
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** protein_chloroplastic
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* left end position:
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* ec number:
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** 261
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** [http://enzyme.expasy.org/EC/2.2.1.9 EC-2.2.1.9]
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* centisome position:
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** 4.6367025   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATCY]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ISOCHORISMATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-9924]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[ATPASE-RXN]]
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** 1 2-oxoglutarate[c] '''+''' 1 isochorismate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[AUPT]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_1922]]
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* Reaction: [[DATCY]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[DATUP]]
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* [[Tiso_gene_17551]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[DCTCP]]
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***EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[DCTUP]]
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== Pathways  ==
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** Source: [[orthology-creinhardtii]]
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* [[PWY-5837]], 1,4-dihydroxy-2-naphthoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5837 PWY-5837]
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* Reaction: [[DGTCY]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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** Source: [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* Reaction: [[DGTUP]]
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* [[orthology]]:
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]:
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* Reaction: [[DTTGY]]
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*** [[esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* [[annotation]]:
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* Reaction: [[DTTUP]]
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** [[pathwaytools]]:
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** Source: [[orthology-creinhardtii]]
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*** [[in-silico_annotation]]
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* Reaction: [[DUTCP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[DUTUP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[GTCY]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[GTUP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ITCY]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ITUP]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12195]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12196]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-5462]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[URIDINEKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[URKI-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[UTCY]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[UTUP]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7193]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1585}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25593 25593]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=261}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08165 R08165]
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{{#set: centisome position=4.6367025    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ATCY|ATPASE-RXN|AUPT|DATCY|DATUP|DCTCP|DCTUP|DGTCY|DGTUP|DTTGY|DTTUP|DUTCP|DUTUP|GTCY|GTUP|ITCY|ITUP|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462|URIDINEKIN-RXN|URKI-RXN|UTCY|UTUP}}
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{{#set: common name=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate_synthase}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7193|PWY-7210}}
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{{#set: common name=protein_chloroplastic}}
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{{#set: ec number=EC-2.2.1.9}}
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{{#set: gene associated=Tiso_gene_1922|Tiso_gene_17551}}
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{{#set: in pathway=PWY-5837}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_14474

  • right end position:
    • 1585
  • transcription direction:
    • POSITIVE
  • left end position:
    • 261
  • centisome position:
    • 4.6367025
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14474&oldid=48494"