Difference between revisions of "Tiso gene 19691"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1143 RXN-1143] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
 
(Created page with "Category:Gene == Gene Tiso_gene_19691 == * right end position: ** 1995 * transcription direction: ** POSITIVE * left end position: ** 353 * centisome position: ** 16.77756...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1143 RXN-1143] ==
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== Gene Tiso_gene_19691 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1995
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* common name:
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* transcription direction:
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** caffeate_o-methyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
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** 353
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* centisome position:
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** 16.777567   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[NADH-DEHYDROG-A-RXN]]
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** 1 [[5-HYDROXY-CONIFERALDEHYDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[SINAPALDEHYDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 5-hydroxy-coniferaldehyde[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 sinapaldehyde[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_18971]]
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* [[PWY-6692]]
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** IN-SILICO_ANNOTATION
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* [[PWY-3781]]
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***AUTOMATED-NAME-MATCH
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* [[PWY-5083]]
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* [[Tiso_gene_18257]]
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* [[PWY0-1334]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY0-1335]]
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== Pathways ==
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* [[PWY-4302]]
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* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
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** '''7''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-5168]], ferulate and sinapate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5168 PWY-5168]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=1995}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06576 R06576]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=353}}
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{{#set: common name=caffeate_o-methyltransferase}}
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{{#set: centisome position=16.777567    }}
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{{#set: ec number=EC-2.1.1.68}}
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
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{{#set: gene associated=Tiso_gene_18971|Tiso_gene_18257}}
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{{#set: pathway associated=PWY-6692|PWY-3781|PWY-5083|PWY0-1334|PWY0-1335|PWY-4302}}
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{{#set: in pathway=PWY-361|PWY-5168}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:21, 21 March 2018

Gene Tiso_gene_19691

  • right end position:
    • 1995
  • transcription direction:
    • POSITIVE
  • left end position:
    • 353
  • centisome position:
    • 16.777567
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19691&oldid=41134"