Difference between revisions of "UDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAG1P-URIDYLTRANS-RXN NAG1P-URIDYLTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dp-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_diphosp...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAG1P-URIDYLTRANS-RXN NAG1P-URIDYLTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dp-n-acetylglucosamine_pyrophosphorylase
+
** ORF
 +
** nucleoside_diphosphate_kinase
 +
** adenylate_kinase_domain-containing_protein_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.7.23 EC-2.7.7.23]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[N-ACETYL-D-GLUCOSAMINE-1-P]][c] '''+''' 1 [[UTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c]
+
** 1 [[UDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[UTP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 N-acetyl-α-D-glucosamine 1-phosphate[c] '''+''' 1 UTP[c] '''+''' 1 H+[c] '''=>''' 1 diphosphate[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine[c]
+
** 1 UDP[c] '''+''' 1 ATP[c] '''=>''' 1 UTP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6457]]
+
* Gene: [[Tiso_gene_16529]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_19372]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6458]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_6459]]
+
* Gene: [[Tiso_gene_18224]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17272]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9290]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17271]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
+
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[UDPNACETYLGALSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGALSYN-PWY UDPNACETYLGALSYN-PWY]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY0-1261]], anhydromuropeptides recycling: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1261 PWY0-1261]
+
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
−
* [[UDPNAGSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=UDPNAGSYN-PWY UDPNAGSYN-PWY]
+
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-synechocystis]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13509 13509]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25098 25098]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00416 R00416]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00156 R00156]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9PPA2 Q9PPA2]
+
−
** [http://www.uniprot.org/uniprot/Q9JWN3 Q9JWN3]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dp-n-acetylglucosamine_pyrophosphorylase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-2.7.7.23}}
+
{{#set: common name=nucleoside_diphosphate_kinase}}
−
{{#set: gene associated=Tiso_gene_6457|Tiso_gene_19372|Tiso_gene_6458|Tiso_gene_6459}}
+
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
−
{{#set: in pathway=PWY-5514|UDPNACETYLGALSYN-PWY|PWY0-1261|UDPNAGSYN-PWY}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_16529|Tiso_gene_18224|Tiso_gene_17272|Tiso_gene_9290|Tiso_gene_195|Tiso_gene_17271}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-7176}}
−
{{#set: reconstruction source=athaliana}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:25, 21 March 2018

Reaction UDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • nucleoside_diphosphate_kinase
    • adenylate_kinase_domain-containing_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP[c] + 1 ATP[c] => 1 UTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDPKIN-RXN&oldid=48669"