Difference between revisions of "Annotation"

Latest revision as of 20:26, 21 March 2018

	Common name	Ec number	Reconstruction category	Reconstruction tool	Reconstruction source	Gene associated	In pathway
1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN	1-acylglycerol-3-phosphate o-acyltransferase	EC-2.3.1.51	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 13959	PWY0-1319 PWY-5981
1-PHOSPHATIDYLINOSITOL-KINASE-RXN	Phosphatidylinositol-4-kinase Phosphatidylinositol kinase Phosphatidylinositol 4-kinase beta ORF	EC-2.7.1.67	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 18530 Tiso gene 2572 Tiso gene 12389 Tiso gene 18529 Tiso gene 17239 Tiso gene 17238 Tiso gene 17240	PWY-6352 PWY-6351
1.1.1.145-RXN	3-beta hydroxysteroid dehydrogenase isomerase ORF	EC-1.1.1.145	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 11016 Tiso gene 2957 Tiso gene 18774 Tiso gene 897
1.1.1.211-RXN	Long chain 3-hydroxyacyl-CoA dehydrogenase (Peroxisomal)	EC-1.1.1.211	Annotation	Pathwaytools	Annotation-experimental annotation	Tiso gene 14262
1.1.1.255-RXN		EC-1.1.1.255	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-3861
1.1.1.271-RXN	GDP-L-fucose synthase	EC-1.1.1.271	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 16970	PWY-66
1.1.1.274-RXN	Oxidoreductase Aldo keto reductase	EC-1.1.1.274	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 8988 Tiso gene 18748	PWY-7165 KETOGLUCONMET-PWY
1.1.1.34-RXN	ORF Mitochondrial carrier protein	EC-1.1.1.34	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 16182 Tiso gene 17889	PWY-922 PWY-6174 PWY-7391 PWY-7524
1.1.1.39-RXN	Mitochondrial malic enzyme ORF	EC-1.1.1.38 EC-1.1.1.39	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 12896 Tiso gene 6675 Tiso gene 12200	PWY-3641 GLUCONEO-PWY PWY-7384 PWY-7686 PWY-7115 PWY-7118
1.1.1.8-RXN	ORF Glycerol-3-phosphate dehydrogenase	EC-1.1.1.8	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 13013 Tiso gene 15777 Tiso gene 6069 Tiso gene 2810 Tiso gene 2811 Tiso gene 3718	PWY-6118 PWY-7385 PWY-7411
1.1.3.37-RXN	ORF Xylitol oxidase Mitochondrial l-galactono- -lactone dehydrogenase	EC-1.1.3.37	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14187 Tiso gene 6787 Tiso gene 210	PWY3O-6
1.1.3.41-RXN	Xylitol oxidase	EC-1.1.3.41	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14187
1.1.4.1-RXN	Vitamin k epoxide reductase complex	EC-1.17.4.4	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11760
1.10.2.2-RXN	Cytochrome b6-fcomplexiron-sulfurchloroplastic Ubiquinol-cytochrome c reductase Probable mitochondrial-processingpeptidasesubunitbeta	EC-1.10.2.2	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 7235 Tiso gene 9627 Tiso gene 4973 Tiso gene 18330 Tiso gene 15926	PWY-7279 PWY-7082 PWY-3781
1.11.1.12-RXN		EC-1.11.1.12	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation		PWY-4081
1.11.1.15-RXN	Alpha beta hydrolase fold protein Peroxiredoxin	EC-1.11.1.15	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10066 Tiso gene 2589
1.13.11.6-RXN	3-hydroxyanthranilate 3,4-dioxygenase	EC-1.13.11.6	Annotation	Pathwaytools	Annotation-experimental annotation	Tiso gene 10922	PWY-5651 PWY-5647 PWY-6309 PWY-6505
1.14.11.18-RXN	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	EC-1.14.11.18	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 16200 Tiso gene 561 Tiso gene 14450 Tiso gene 14707 Tiso gene 13319
1.14.11.2-RXN	Prolyl 4-hydroxylase ORF	EC-1.14.11.2	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9165 Tiso gene 16122 Tiso gene 17919 Tiso gene 18235 Tiso gene 15594 Tiso gene 9455 Tiso gene 18208 Tiso gene 1468 Tiso gene 13008 Tiso gene 8652 Tiso gene 4246 Tiso gene 3021 Tiso gene 9227 Tiso gene 17593 Tiso gene 292 Tiso gene 9873 Tiso gene 9035 Tiso gene 6296 Tiso gene 9636 Tiso gene 16842 Tiso gene 19638 Tiso gene 18933 Tiso gene 2158 Tiso gene 18145 Tiso gene 15328 Tiso gene 18689 Tiso gene 2280 Tiso gene 17823
1.14.13.8-RXN	ORF Fad-containing monooxygenase	EC-1.14.13.8	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9613 Tiso gene 4 Tiso gene 9139 Tiso gene 10094
1.18.1.2-RXN	Ferredoxin--nadp embryochloroplastic Ferredoxin--nadp root isozyme chloroplastic	EC-1.18.1.2	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 20054 Tiso gene 19031 Tiso gene 17381 Tiso gene 17170 Tiso gene 20055 Tiso gene 20168	PWY-7230 PWY-101
1.2.1.13-RXN	Glyceraldehyde-3-phosphate dehydrogenase	EC-1.2.1.13	Manual Annotation	Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation	Tiso gene 6765 Tiso gene 20000 Tiso gene 10646 Tiso gene 6766	CALVIN-PWY
1.2.1.25-RXN	3-methyl-2-oxobutanoate dehydrogenase	EC-1.2.1.25	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 11793 Tiso gene 3260	VALDEG-PWY
1.2.1.27-RXN	Methylmalonate-semialdehyde dehydrogenase	EC-1.2.1.27	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 11323	PWY-5642
1.2.1.31-RXN	Polyketide synthase ORF	EC-1.2.1.31	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6563 Tiso gene 16719 Tiso gene 5425 Tiso gene 5424 Tiso gene 6562	LYSINE-DEG1-PWY
1.2.1.65-RXN		EC-1.2.1.65	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-5427
1.2.4.4-RXN	3-methyl-2-oxobutanoate dehydrogenase 2-oxoisovalerate dehydrogenase alpha subunit mitochondrial	EC-1.2.4.4	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 18084 Tiso gene 11793 Tiso gene 3260	PWY-5046
1.3.1.20-RXN	Dihydrodiol dehydrogenase	EC-1.3.1.20	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10406
1.3.99.23-RXN	Carotenoid isomerase Carotene isomerase Fad nad -binding oxidoreductase domain-containing protein Carotenoid isomerase-like protein All-trans- -dihydroretinol saturase ORF	EC-1.3.99.23	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 13369 Tiso gene 9534 Tiso gene 3092 Tiso gene 917 Tiso gene 13367 Tiso gene 16795 Tiso gene 16794
1.3.99.5-RXN	3-oxo-5-alpha-steroid 4-dehydrogenase	EC-1.3.1.22	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14327
1.5.1.20-RXN	Methylenetetrahydrofolate reductase -methylenetetrahydrofolate reductase	EC-1.5.1.20	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 16954 Tiso gene 14582	PWY-2201 1CMET2-PWY CODH-PWY PWY-3841
1.5.1.8-RXN		EC-1.5.1.8	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 1156	LYSINE-DEG1-PWY
1.5.1.9-RXN	Saccharopine dehydrogenase	EC-1.5.1.9	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9366 Tiso gene 7038 Tiso gene 7039 Tiso gene 4160 Tiso gene 10095 Tiso gene 1156	LYSINE-DEG1-PWY
1.6.4.4-RXN	Nucleoredoxin ORF	EC-1.8.1.8	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 475 Tiso gene 15704
1.8.4.12-RXN	Peptide methionine-r-sulfoxide reductase ORF Methionine sulfoxide reductase with associated domain Methionine sulfoxide reductase b	EC-1.8.4.12	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 16975 Tiso gene 6049 Tiso gene 18058 Tiso gene 14455 Tiso gene 19578
1.8.4.14-RXN	Peptide methionine-r-sulfoxide reductase	EC-1.8.4.14	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 19578
13-BETA-GLUCAN-SYNTHASE-RXN	-beta-glucan synthase component gls2 Callose synthase Callose Beta-glucan synthesis-associated	EC-2.4.1.34	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 7603 Tiso gene 5462 Tiso gene 7967 Tiso gene 7966 Tiso gene 3322 Tiso gene 5460	PWY-6773
14-LACTONASE-RXN	Gluconolactonase	EC-3.1.1.25	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 1948 Tiso gene 1947
1TRANSKETO-RXN	Transketolase	EC-2.2.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Orthology-athaliana Annotation-experimental annotation Orthology-synechocystis	Tiso gene 5008 Tiso gene 11559	P124-PWY CALVIN-PWY P21-PWY PWY-5723 PWY-1861 P185-PWY NONOXIPENT-PWY
2-AMINOADIPATE-AMINOTRANSFERASE-RXN		EC-2.6.1.39	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-3081 PWY-5283 LYSINE-AMINOAD-PWY LYSINE-DEG1-PWY PWY66-425
2-DEHYDROPANTOATE-REDUCT-RXN	2-dehydropantoate 2-reductase	EC-1.1.1.169	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 16426 Tiso gene 10174 Tiso gene 12761 Tiso gene 10173 Tiso gene 12762 Tiso gene 9392	PANTO-PWY PWY-6654
2-HALOACID-DEHALOGENASE-RXN	Had family hydrolase	EC-3.8.1.10 EC-3.8.1.2	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 3200
2-ISOPROPYLMALATESYN-RXN	2-isopropylmalate synthase chloroplastic	EC-2.3.3.13	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 11453	LEUSYN-PWY PWY-6871
2-KETO-ADIPATE-DEHYDROG-RXN			Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 9330 Tiso gene 10209	PWY-5652 PWY66-425 LYSINE-DEG1-PWY
2-OCTAPRENYL-6-OHPHENOL-METHY-RXN	2-octaprenyl-6-hydroxyphenyl methylase 3-demethylubiquinone-9 3-methyltransferase	EC-2.1.1.222	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6943	PWY-6708
2.1.1.109-RXN	O-methyltransferase i	EC-2.1.1.109	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 20416	PWY-5956
2.1.1.127-RXN	Ribulose- bisphosphate carboxylase oxygenase large subunit n- chloropl	EC-2.1.1.127	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6151
2.1.1.137-RXN	ORF	EC-2.1.1.137	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 16361	PWY-4202
2.1.1.138-RXN	ORF	EC-2.1.1.137	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 16361	PWY-4202
2.1.1.143-RXN	Sterol methyltransferase	EC-2.1.1.143	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11850 Tiso gene 11849	PWY-2541
... further results

@@ Line 1: / Line 1: @@
-[[Category:Reaction]]
+{{#ask: [[Category:Reaction]] [[reconstruction category::annotation]]
-== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] ==
+| ?common name
-* direction:
+| ?ec number
-** LEFT-TO-RIGHT
+| ?reconstruction category
-* common name:
+| ?reconstruction tool
-** methionine_aminopeptidase
+| ?reconstruction source
-* ec number:
+| ?reconstruction comment
-** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
+| ?gene associated
-* Synonym(s):
+| ?in pathway
+}}
-== Reaction Formula ==
-* With identifiers:
-** 1 [[WATER]][c] '''+''' 1 [[L-methionyl-glycyl-Protein]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-glycine]][c]
-* With common name(s):
-** 1 H2O[c] '''+''' 1 an N-terminal-L-methionyl-glycyl-[protein][c] '''=>''' 1 L-methionine[c] '''+''' 1 an N-terminal glycyl-[protein][c]
-== Genes associated with this reaction  ==
-Genes have been associated with this reaction based on different elements listed below.
-* [[Tiso_gene_4247]]
-** IN-SILICO_ANNOTATION
-***AUTOMATED-NAME-MATCH
-* [[Tiso_gene_5715]]
-** IN-SILICO_ANNOTATION
-***AUTOMATED-NAME-MATCH
-** EXPERIMENTAL_ANNOTATION
-***AUTOMATED-NAME-MATCH
-== Pathways  ==
-* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
-** '''21''' reactions found over '''21''' reactions in the full pathway
-== Reconstruction information  ==
-* [[annotation]]:
-** [[pathwaytools]]:
-*** [[experimental_annotation]]
-*** [[in-silico_annotation]]
-== External links  ==
-{{#set: direction=LEFT-TO-RIGHT}}
-{{#set: common name=methionine_aminopeptidase}}
-{{#set: ec number=EC-3.4.11.18}}
-{{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}}
-{{#set: in pathway=PWY-7800}}
-{{#set: reconstruction category=annotation}}
-{{#set: reconstruction tool=pathwaytools}}
-{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Difference between revisions of "Annotation"

Latest revision as of 20:26, 21 March 2018

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