Difference between revisions of "1CMET2-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1141 RXN0-1141] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoate--GcvH protein ligas...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TA...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1141 RXN0-1141] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** lipoate--GcvH protein ligase
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** N10-formyl-tetrahydrofolate biosynthesis
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** lipoate-protein_ligase_a
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** lipoate-protein_ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.1.20 EC-6.3.1.20]
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* Synonym(s):
 
* Synonym(s):
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** N10-formyl-THF biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[LIPOIC-ACID]][c] '''+''' 1 [[Gcv-H]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c]
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* [[1.5.1.20-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 (R)-lipoate[c] '''+''' 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c]
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*** [[Tiso_gene_14582]]
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*** [[Tiso_gene_16954]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_17215]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_8713]]
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* [[DIHYDROFOLATEREDUCT-RXN]]
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** IN-SILICO_ANNOTATION
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** 0 associated gene:
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***AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_4494]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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* [[GLYOHMETRANS-RXN]]
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***AUTOMATED-NAME-MATCH
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** 4 associated gene(s):
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* [[Tiso_gene_17216]]
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*** [[Tiso_gene_16153]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_7776]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_18652]]
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* [[Tiso_gene_4493]]
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*** [[Tiso_gene_16154]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* [[annotation]]:
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*** [[orthology-esiliculosus]]
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** [[pathwaytools]]:
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* [[HOMOCYSMETB12-RXN]]
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*** [[in-silico_annotation]]
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** 1 associated gene(s):
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*** [[Tiso_gene_1602]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6004]]
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*** [[Tiso_gene_432]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[THYMIDYLATESYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_7708]]
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*** [[Tiso_gene_18478]]
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** 2 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=5-FORMYL-THF-CYCLO-LIGASE-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN GCVMULTI-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=lipoate--GcvH protein ligase}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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{{#set: common name=lipoate-protein_ligase_a}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=lipoate-protein_ligase}}
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{{#set: taxonomic range=TAX-33208}}
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{{#set: ec number=EC-6.3.1.20}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Tiso_gene_17215|Tiso_gene_8713|Tiso_gene_4494|Tiso_gene_17216|Tiso_gene_4493}}
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{{#set: common name=N10-formyl-tetrahydrofolate biosynthesis}}
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{{#set: in pathway=}}
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{{#set: common name=N10-formyl-THF biosynthesis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction found=7}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=9}}
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{{#set: reconstruction source=in-silico_annotation}}
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{{#set: completion rate=78.0}}

Latest revision as of 20:22, 21 March 2018

Pathway 1CMET2-PWY

  • taxonomic range:
  • common name:
    • N10-formyl-tetrahydrofolate biosynthesis
  • Synonym(s):
    • N10-formyl-THF biosynthesis

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links





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