Difference between revisions of "GUANYL-KIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANYL-KIN-RXN GUANYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidine_phospho...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANYL-KIN-RXN GUANYL-KIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** phenylpropanoid biosynthesis
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** thymidine_phosphorylase
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.8 EC-2.7.4.8]
 
* Synonym(s):
 
* Synonym(s):
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** monolignol biosynthesis
 
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** lignin biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''15''' reactions in the full pathway
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* With identifiers:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[GMP]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[ADP]][c]
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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* With common name(s):
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* [[RXN-1101]]
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** 1 ATP[c] '''+''' 1 GMP[c] '''=>''' 1 GDP[c] '''+''' 1 ADP[c]
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* [[RXN-1102]]
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* [[RXN-1106]]
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== Genes associated with this reaction  ==
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* [[RXN-1125]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-1143]]
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* Gene: [[Tiso_gene_1011]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.36-RXN 1.14.13.36-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.133-RXN 2.3.1.133-RXN]
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* Gene: [[Tiso_gene_15049]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2581 RXN-2581]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2601 RXN-2601]
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** Source: [[orthology-athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2602 RXN-2602]
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** Source: [[orthology-synechocystis]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2621 RXN-2621]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2622 RXN-2622]
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* Gene: [[Tiso_gene_12554]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_4560]]
 +
** Source: [[orthology-athaliana]]
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== Pathways  ==
 +
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* RHEA:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-361 PWY-361]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20780 20780]
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{{#set: taxonomic range=TAX-58024}}
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* LIGAND-RXN:
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{{#set: common name=phenylpropanoid biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00332 R00332]
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{{#set: common name=monolignol biosynthesis|lignin biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=7}}
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** [http://www.uniprot.org/uniprot/Q9PNB8 Q9PNB8]
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{{#set: reaction not found=15}}
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** [http://www.uniprot.org/uniprot/Q9CEE3 Q9CEE3]
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{{#set: completion rate=47.0}}
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** [http://www.uniprot.org/uniprot/Q9JT96 Q9JT96]
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** [http://www.uniprot.org/uniprot/P44310 P44310]
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** [http://www.uniprot.org/uniprot/P15454 P15454]
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** [http://www.uniprot.org/uniprot/P60546 P60546]
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** [http://www.uniprot.org/uniprot/P31006 P31006]
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** [http://www.uniprot.org/uniprot/P46195 P46195]
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** [http://www.uniprot.org/uniprot/Q16774 Q16774]
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** [http://www.uniprot.org/uniprot/P72648 P72648]
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** [http://www.uniprot.org/uniprot/Q6RHR9 Q6RHR9]
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** [http://www.uniprot.org/uniprot/Q9M681 Q9M681]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=thymidine_phosphorylase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.7.4.8}}
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{{#set: gene associated=Tiso_gene_1011|Tiso_gene_15049|Tiso_gene_12554|Tiso_gene_4560}}
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{{#set: in pathway=PWY-7221}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:14, 21 March 2018

Reaction GUANYL-KIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thymidine_phosphorylase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 GMP[c] => 1 GDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7221, guanosine ribonucleotides de novo biosynthesis: PWY-7221
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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