Difference between revisions of "CDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase_d...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5107 PWY-5107] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPKIN-RXN CDPKIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** phytol salvage pathway
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** ORF
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** adenylate_kinase_domain-containing_protein_1
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** nucleoside_diphosphate_kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
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** phytyl-PP biosynthesis (from phytol)
 
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** phytyl-diphosphate biosynthesis (from phytol)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[RXN-7683]]
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** 1 [[CDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CTP]][c] '''+''' 1 [[ADP]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7763 RXN-7763]
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** 1 CDP[c] '''+''' 1 ATP[c] '''=>''' 1 CTP[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_17272]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9290]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18224]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17271]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_195]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16529]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7205]], CMP phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7205 PWY-7205]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* RHEA:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5107 PWY-5107]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25237 25237]
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{{#set: taxonomic range=TAX-3398}}
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* LIGAND-RXN:
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{{#set: common name=phytol salvage pathway}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00570 R00570]
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{{#set: common name=phytyl-PP biosynthesis (from phytol)|phytyl-diphosphate biosynthesis (from phytol)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=1}}
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{{#set: common name=ORF}}
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{{#set: reaction not found=2}}
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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{{#set: completion rate=50.0}}
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{{#set: common name=nucleoside_diphosphate_kinase}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Tiso_gene_17272|Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_17271|Tiso_gene_195|Tiso_gene_16529}}
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{{#set: in pathway=PWY-7205}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:14, 21 March 2018

Reaction CDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • adenylate_kinase_domain-containing_protein_1
    • nucleoside_diphosphate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 CDP[c] + 1 ATP[c] => 1 CTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7205, CMP phosphorylation: PWY-7205
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CDPKIN-RXN&oldid=40331"