Difference between revisions of "RXN-16909"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16909 RXN-16909] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16909 RXN-16909] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** Calvin-Benson-Bassham cycle
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** carbamoyl_phosphate_synthetase
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** protein_pyr1-3
 
* Synonym(s):
 
* Synonym(s):
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** photosynthetic dark reactions
 
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** photosynthetic CO2 fixation
 
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** reductive pentose phosphate pathway
 
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** Calvin cycle
 
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** carbon fixation
 
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** Calvin-Benson cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''13''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[1.2.1.13-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[CPD-18238]][c] '''+''' 1 [[ADP]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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* [[2TRANSKETO-RXN]]
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** 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 carboxyphosphate[c] '''+''' 1 ADP[c]
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* [[F16ALDOLASE-RXN]]
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* [[F16BDEPHOS-RXN]]
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== Genes associated with this reaction  ==
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* [[PHOSGLYPHOS-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PHOSPHORIBULOKINASE-RXN]]
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* Gene: [[Tiso_gene_4976]]
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* [[RIB5PISOM-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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*** Assignment: EC-NUMBER
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* [[RIBULP3EPIM-RXN]]
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* Gene: [[Tiso_gene_4685]]
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* [[SEDOBISALDOL-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
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*** Assignment: EC-NUMBER
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* [[TRIOSEPISOMERIZATION-RXN]]
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** Source: [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4975]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-7693]], guadinomine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7693 PWY-7693]
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** '''3''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PLANTCYC : CALVIN-PWY
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=carbamoyl_phosphate_synthetase}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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{{#set: common name=protein_pyr1-3}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4685|Tiso_gene_4975}}
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{{#set: taxonomic range=TAX-39119}}
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{{#set: in pathway=PWY-7693}}
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{{#set: taxonomic range=TAX-38254}}
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{{#set: reconstruction category=annotation}}
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{{#set: taxonomic range=TAX-29197}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
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{{#set: taxonomic range=TAX-38410}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: taxonomic range=TAX-5747}}
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{{#set: taxonomic range=TAX-2864}}
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{{#set: taxonomic range=TAX-877183}}
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{{#set: taxonomic range=TAX-2836}}
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{{#set: taxonomic range=TAX-3027}}
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{{#set: taxonomic range=TAX-2830}}
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{{#set: taxonomic range=TAX-2833}}
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{{#set: taxonomic range=TAX-3041}}
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{{#set: taxonomic range=TAX-33682}}
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{{#set: taxonomic range=TAX-2763}}
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{{#set: taxonomic range=TAX-2870}}
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{{#set: taxonomic range=TAX-2825}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=Calvin-Benson-Bassham cycle}}
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{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
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{{#set: reaction found=13}}
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{{#set: reaction not found=13}}
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{{#set: completion rate=100.0}}
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Latest revision as of 20:17, 21 March 2018

Reaction RXN-16909

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl_phosphate_synthetase
    • protein_pyr1-3
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 hydrogencarbonate[c] => 1 carboxyphosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7693, guadinomine B biosynthesis: PWY-7693
    • 3 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16909&oldid=40638"