Difference between revisions of "RXN-14227"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14227 RXN-14227] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14227 RXN-14227] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** carbamoyl_phosphate_synthetase
+
** 5_deoxy_cytosolic_type_c_protein
−
** protein_pyr1-3
+
** 5_-nucleotidase
 +
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''=>''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[ADP]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD-8259]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 ATP[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''=>''' 1 carbamoyl phosphate[c] '''+''' 1 phosphate[c] '''+''' 2 ADP[c] '''+''' 2 H+[c]
+
** 1 H2O[c] '''+''' 1 β-nicotinate D-ribonucleotide[c] '''=>''' 1 phosphate[c] '''+''' 1 β-D-ribosylnicotinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4976]]
+
* Gene: [[Tiso_gene_6640]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_5911]]
−
* [[Tiso_gene_4975]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14434]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_4685]]
+
* Gene: [[Tiso_gene_6988]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14246]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14435]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13929]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30938 30938]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
+
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03346 R03346]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/O15829 O15829]
+
−
** [http://www.uniprot.org/uniprot/O15830 O15830]
+
−
** [http://www.uniprot.org/uniprot/P07756 P07756]
+
−
** [http://www.uniprot.org/uniprot/P31327 P31327]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carbamoyl_phosphate_synthetase}}
+
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
−
{{#set: common name=protein_pyr1-3}}
+
{{#set: common name=5_-nucleotidase}}
−
{{#set: ec number=EC-6.3.4.16}}
+
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
−
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4975|Tiso_gene_4685}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=PWY-4984}}
+
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_6640|Tiso_gene_5911|Tiso_gene_14434|Tiso_gene_6988|Tiso_gene_14246|Tiso_gene_14435|Tiso_gene_13929}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:23, 21 March 2018

Reaction RXN-14227

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_deoxy_cytosolic_type_c_protein
    • 5_-nucleotidase
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 β-nicotinate D-ribonucleotide[c] => 1 phosphate[c] + 1 β-D-ribosylnicotinate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14227&oldid=41273"