Difference between revisions of "Tiso gene 13306"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
(Created page with "Category:Gene == Gene Tiso_gene_13306 == * right end position: ** 6380 * transcription direction: ** POSITIVE * left end position: ** 3486 * centisome position: ** 54.5710...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] ==
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== Gene Tiso_gene_13306 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6380
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* common name:
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* transcription direction:
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** 5_-nucleotidase
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** POSITIVE
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** 5_deoxy_cytosolic_type_c_protein
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* left end position:
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** 3486
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** ORF
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* centisome position:
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* ec number:
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** 54.571068   
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.21-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[AMP]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 AMP[c] '''=>''' 1 adenosine[c] '''+''' 1 phosphate[c]
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* Reaction: [[RXN-10769]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-10773]]
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* [[Tiso_gene_6640]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_14435]]
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* Reaction: [[RXN-13602]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_6988]]
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* Reaction: [[RXN-13603]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-14179]]
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* [[Tiso_gene_14434]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-5341]]
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* [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-8036]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_5911]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-9674]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14246]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-3121]]
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== Pathways  ==
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* [[PWY-6002]]
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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* [[PWY-6788]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5176]]
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== Reconstruction information  ==
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* [[PWY-7092]]
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* [[orthology]]:
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* [[PWY-7091]]
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6380}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29375 29375]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3486}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
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{{#set: centisome position=54.571068    }}
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* UNIPROT:
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{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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** [http://www.uniprot.org/uniprot/P06196 P06196]
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{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
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** [http://www.uniprot.org/uniprot/P21588 P21588]
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** [http://www.uniprot.org/uniprot/O34313 O34313]
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** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
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** [http://www.uniprot.org/uniprot/O29385 O29385]
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** [http://www.uniprot.org/uniprot/P44569 P44569]
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** [http://www.uniprot.org/uniprot/O83142 O83142]
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** [http://www.uniprot.org/uniprot/P49902 P49902]
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** [http://www.uniprot.org/uniprot/P22848 P22848]
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** [http://www.uniprot.org/uniprot/Q05927 Q05927]
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** [http://www.uniprot.org/uniprot/P21589 P21589]
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** [http://www.uniprot.org/uniprot/P29240 P29240]
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** [http://www.uniprot.org/uniprot/P07024 P07024]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=5_-nucleotidase}}
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_6640|Tiso_gene_14435|Tiso_gene_6988|Tiso_gene_14434|Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14246}}
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{{#set: in pathway=SALVADEHYPOX-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:23, 21 March 2018

Gene Tiso_gene_13306

  • right end position:
    • 6380
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3486
  • centisome position:
    • 54.571068
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13306&oldid=41280"