Difference between revisions of "RXN-8642"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glyceraldehyde-3-phos...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == * direction: ** REVERSIBLE * common name: ** ORF * Synonym(s): ** oxalsuccini...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** glyceraldehyde-3-phosphate_dehydrogenase
+
** ORF
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.2.1.13 EC-1.2.1.13]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** oxalsuccinic decarboxylase
 +
** isocitrate (NADP) dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** NADP-specific isocitrate dehydrogenase
 +
** NADP-linked isocitrate dehydrogenase
 +
** NADP isocitric dehydrogenase
 +
** isocitrate dehydrogenase (NADP-dependent)
 +
** NADP-dependent isocitric dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** NADP+-linked isocitrate dehydrogenase
 +
** IDH (ambiguous)
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** NADP+-ICDH
 +
** NADP+-IDH
 +
** IDP
 +
** IDP1
 +
** IDP2
 +
** IDP3
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[GAP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 NADPH[c] '''=>''' 1 phosphate[c] '''+''' 1 NADP+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
+
** 1 H+[c] '''+''' 1 oxalosuccinate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6766]]
+
* Gene: [[Tiso_gene_18262]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6765]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_10809]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_20000]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10646]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-primary_network]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10296 10296]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01063 R01063]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P09672 P09672]
+
{{#set: common name=ORF}}
−
** [http://www.uniprot.org/uniprot/P09094 P09094]
+
{{#set: common name=oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
−
** [http://www.uniprot.org/uniprot/P12858 P12858]
+
{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
−
** [http://www.uniprot.org/uniprot/P12859 P12859]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P12860 P12860]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P09315 P09315]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P25856 P25856]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q7M1R8 Q7M1R8]
+
−
** [http://www.uniprot.org/uniprot/Q7M1R7 Q7M1R7]
+
−
** [http://www.uniprot.org/uniprot/Q37174 Q37174]
+
−
** [http://www.uniprot.org/uniprot/P30724 P30724]
+
−
** [http://www.uniprot.org/uniprot/P80505 P80505]
+
−
** [http://www.uniprot.org/uniprot/Q55245 Q55245]
+
−
** [http://www.uniprot.org/uniprot/O22534 O22534]
+
−
** [http://www.uniprot.org/uniprot/P50362 P50362]
+
−
** [http://www.uniprot.org/uniprot/P19866 P19866]
+
−
** [http://www.uniprot.org/uniprot/Q41019 Q41019]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glyceraldehyde-3-phosphate_dehydrogenase}}
+
−
{{#set: ec number=EC-1.2.1.13}}
+
−
{{#set: gene associated=Tiso_gene_6766|Tiso_gene_6765|Tiso_gene_20000|Tiso_gene_10646}}
+
−
{{#set: in pathway=CALVIN-PWY}}
+
−
{{#set: reconstruction category=manual|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:04, 21 March 2018

Reaction RXN-8642

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • Synonym(s):
    • oxalsuccinic decarboxylase
    • isocitrate (NADP) dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • NADP-specific isocitrate dehydrogenase
    • NADP-linked isocitrate dehydrogenase
    • NADP isocitric dehydrogenase
    • isocitrate dehydrogenase (NADP-dependent)
    • NADP-dependent isocitric dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • NADP+-linked isocitrate dehydrogenase
    • IDH (ambiguous)
    • dual-cofactor-specific isocitrate dehydrogenase
    • NADP+-ICDH
    • NADP+-IDH
    • IDP
    • IDP1
    • IDP2
    • IDP3

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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