Difference between revisions of "FADSYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fad_synthetase * ec numbe...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FADSYN-RXN FADSYN-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** superpathway of 5-aminoimidazole ribonucleotide biosynthesis
+
** fad_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.7.2 EC-2.7.7.2]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''6''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[AIRS-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FMN]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_1369]]
+
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 FMN[c] '''=>''' 1 FAD[c] '''+''' 1 diphosphate[c]
−
** 4 reconstruction source(s) associated:
+
 
−
*** [[annotation-in-silico_annotation]]
+
== Genes associated with this reaction  ==
−
*** [[manual-primary_network]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_5393]]
−
*** [[orthology-synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[FGAMSYN-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 1 associated gene(s):
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_5865]]
+
** Source: [[orthology-creinhardtii]]
−
** 4 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_5392]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
−
*** [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_7479]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** [[manual-primary_network]]
+
* Gene: [[Tiso_gene_1086]]
−
* [[GLYRIBONUCSYN-RXN]]
+
** Source: [[orthology-synechocystis]]
−
** 1 associated gene(s):
+
== Pathways  ==
−
*** [[Tiso_gene_1369]]
+
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
−
** 5 reconstruction source(s) associated:
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
*** [[annotation-experimental_annotation]]
+
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
−
*** [[orthology-athaliana]]
+
** '''4''' reactions found over '''10''' reactions in the full pathway
−
*** [[annotation-in-silico_annotation]]
+
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
−
*** [[manual-primary_network]]
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
*** [[orthology-esiliculosus]]
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
−
* [[PRPPAMIDOTRANS-RXN]]
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
** 2 associated gene(s):
+
== Reconstruction information  ==
−
*** [[Tiso_gene_1007]]
+
* Category: [[orthology]]
−
*** [[Tiso_gene_9914]]
+
** Source: [[orthology-creinhardtii]]
−
** 7 reconstruction source(s) associated:
+
*** Tool: [[pantograph]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** [[orthology-esiliculosus]]
+
*** Tool: [[pantograph]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[orthology-athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[orthology-synechocystis]]
+
* Category: [[annotation]]
−
*** [[manual-primary_network]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
* [[PWY-6121]]
+
−
** 0 associated gene:
+
−
* [[PWY-6122]]
+
−
** 0 associated gene:
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=GARTRANSFORMYL2-RXN GARTRANSFORMYL2-RXN]
+
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
* RHEA:
−
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6277 PWY-6277]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17237 17237]
−
{{#set: taxonomic range=TAX-2}}
+
* LIGAND-RXN:
−
{{#set: common name=superpathway of 5-aminoimidazole ribonucleotide biosynthesis}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
−
{{#set: reaction found=6}}
+
* UNIPROT:
−
{{#set: total reaction=9}}
+
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
−
{{#set: completion rate=67.0}}
+
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
 +
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=fad_synthetase}}
 +
{{#set: ec number=EC-2.7.7.2}}
 +
{{#set: gene associated=Tiso_gene_5393|Tiso_gene_5392|Tiso_gene_7479|Tiso_gene_1086}}
 +
{{#set: in pathway=PWY66-366|PWY-6167|PWY-6168|RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:04, 21 March 2018

Reaction FADSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • fad_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H+[c] + 1 FMN[c] => 1 FAD[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=FADSYN-RXN&oldid=39330"