Difference between revisions of "1.2.1.13-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5048 PWY-5048] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58023 TAX-5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glyceraldehyde-3-phos...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5048 PWY-5048] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.13-RXN 1.2.1.13-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58023 TAX-58023]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** rosmarinic acid biosynthesis I
+
** glyceraldehyde-3-phosphate_dehydrogenase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.2.1.13 EC-1.2.1.13]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''7''' reactions in the full pathway
+
* With identifiers:
−
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
+
** 1 [[PROTON]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[NADP]][c]
−
** 3 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_17718]]
+
** 1 H+[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 NADPH[c] '''=>''' 1 phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 NADP+[c]
−
*** [[Tiso_gene_10680]]
+
 
−
*** [[Tiso_gene_6815]]
+
== Genes associated with this reaction  ==
−
** 3 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[manual-primary_network]]
+
* Gene: [[Tiso_gene_6766]]
−
*** [[orthology-creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-synechocystis]]
+
*** Assignment: EC-NUMBER
−
== Reaction(s) not found ==
+
* Gene: [[Tiso_gene_6765]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.222-RXN 1.1.1.222-RXN]
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7626 RXN-7626]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7628 RXN-7628]
+
** Source: [[annotation-experimental_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7629 RXN-7629]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7630 RXN-7630]
+
* Gene: [[Tiso_gene_20000]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7631 RXN-7631]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10646]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-58023}}
+
* RHEA:
−
{{#set: common name=rosmarinic acid biosynthesis I}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10296 10296]
−
{{#set: reaction found=1}}
+
* LIGAND-RXN:
−
{{#set: total reaction=7}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01063 R01063]
−
{{#set: completion rate=14.0}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P09672 P09672]
 +
** [http://www.uniprot.org/uniprot/P09094 P09094]
 +
** [http://www.uniprot.org/uniprot/P12858 P12858]
 +
** [http://www.uniprot.org/uniprot/P12859 P12859]
 +
** [http://www.uniprot.org/uniprot/P12860 P12860]
 +
** [http://www.uniprot.org/uniprot/P09315 P09315]
 +
** [http://www.uniprot.org/uniprot/P25856 P25856]
 +
** [http://www.uniprot.org/uniprot/Q7M1R8 Q7M1R8]
 +
** [http://www.uniprot.org/uniprot/Q7M1R7 Q7M1R7]
 +
** [http://www.uniprot.org/uniprot/Q37174 Q37174]
 +
** [http://www.uniprot.org/uniprot/P30724 P30724]
 +
** [http://www.uniprot.org/uniprot/P80505 P80505]
 +
** [http://www.uniprot.org/uniprot/Q55245 Q55245]
 +
** [http://www.uniprot.org/uniprot/O22534 O22534]
 +
** [http://www.uniprot.org/uniprot/P50362 P50362]
 +
** [http://www.uniprot.org/uniprot/P19866 P19866]
 +
** [http://www.uniprot.org/uniprot/Q41019 Q41019]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=glyceraldehyde-3-phosphate_dehydrogenase}}
 +
{{#set: ec number=EC-1.2.1.13}}
 +
{{#set: gene associated=Tiso_gene_6766|Tiso_gene_6765|Tiso_gene_20000|Tiso_gene_10646}}
 +
{{#set: in pathway=CALVIN-PWY}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:04, 21 March 2018

Reaction 1.2.1.13-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glyceraldehyde-3-phosphate_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 1,3-bisphospho-D-glycerate[c] + 1 NADPH[c] => 1 phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c] + 1 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=1.2.1.13-RXN&oldid=39349"