Difference between revisions of "RXN-14950"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORPHYRIN_IX PROTOPORPHYRIN_IX] == * smiles: ** C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14950 RXN-14950] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoyl_synthase_mitochondri...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORPHYRIN_IX PROTOPORPHYRIN_IX] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14950 RXN-14950] ==
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* smiles:
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* direction:
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** C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=C4(C(CCC([O-])=O)=C(C)C(=CC3(C(C=C)=C(C)C(=CC=1N2)N=3))N4))=N5)))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=KSFOVUSSGSKXFI-UJJXFSCMSA-L
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* common name:
 
* common name:
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** protoporphyrin IX
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** lipoyl_synthase_mitochondrial
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* molecular weight:
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** lipoyl_mitochondrial
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** 560.651   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.8.1.8 EC-2.8.1.8]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN1F-20]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 2 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[Octanoylated-Gcv-H]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[CH33ADO]][c]
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* [[PROTOPORGENOXI-RXN]]
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* With common name(s):
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* [[PPPGO]]
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** 2 a sulfurated [sulfur carrier][c] '''+''' 1 a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 2 an unsulfurated [sulfur carrier][c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 2 L-methionine[c] '''+''' 2 5'-deoxyadenosine[c]
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== Reaction(s) of unknown directionality ==
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* [[PROTOHEMEFERROCHELAT-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_437]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8049]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-7382]], lipoate biosynthesis and incorporation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7382 PWY-7382]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 553-12-8
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: common name=lipoyl_synthase_mitochondrial}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=3794562 3794562]
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{{#set: common name=lipoyl_mitochondrial}}
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* HMDB : HMDB00241
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{{#set: ec number=EC-2.8.1.8}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_437|Tiso_gene_8049}}
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** [http://www.genome.jp/dbget-bin/www_bget?C02191 C02191]
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{{#set: in pathway=PWY-7382}}
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* CHEMSPIDER:
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{{#set: reconstruction category=annotation}}
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** [http://www.chemspider.com/Chemical-Structure.20171337.html 20171337]
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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* CHEBI:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57306 57306]
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* BIGG : ppp9
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{{#set: smiles=C=CC1(C(C)=C2(C=C5(C(C)=C(CCC([O-])=O)C(C=C4(C(CCC([O-])=O)=C(C)C(=CC3(C(C=C)=C(C)C(=CC=1N2)N=3))N4))=N5)))}}
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{{#set: inchi key=InChIKey=KSFOVUSSGSKXFI-UJJXFSCMSA-L}}
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{{#set: common name=protoporphyrin IX}}
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{{#set: molecular weight=560.651    }}
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{{#set: consumed by=RXN1F-20}}
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{{#set: produced by=PROTOPORGENOXI-RXN|PPPGO}}
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{{#set: reversible reaction associated=PROTOHEMEFERROCHELAT-RXN}}
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Latest revision as of 20:05, 21 March 2018

Reaction RXN-14950

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lipoyl_synthase_mitochondrial
    • lipoyl_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7382, lipoate biosynthesis and incorporation (yeast): PWY-7382
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14950&oldid=39355"