Difference between revisions of "RXN-16101"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16101 RXN-16101] == * direction: ** LEFT-TO-RIGHT * common name: ** delta-8_desaturase * ec num...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16101 RXN-16101] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dna_ligase
+
** delta-8_desaturase
−
** dna_ligase_mrna_capping_enzyme
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7]
+
** [http://enzyme.expasy.org/EC/1.14.19.4 EC-1.14.19.4]
−
** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1]
+
−
** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c]
+
** 1 [[CPD-17352]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[CPD-17281]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 ATP[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 DNAn[c]
+
** 1 a [glycerolipid]-(11Z,14Z,17Z)-icosatrienoate[c] '''+''' 1 oxygen[c] '''+''' 2 H+[c] '''+''' 2 a ferrocytochrome b5[c] '''=>''' 2 H2O[c] '''+''' 1 a [glycerolipid]-icosatetraenoate[c] '''+''' 2 a ferricytochrome b5[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3498]]
+
* Gene: [[Tiso_gene_5024]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
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* [[Tiso_gene_14250]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11251]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6743]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14249]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12142]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7602 PWY-7602]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P12000 P12000]
 
−
** [http://www.uniprot.org/uniprot/P18858 P18858]
 
−
** [http://www.uniprot.org/uniprot/P35970 P35970]
 
−
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
 
−
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
 
−
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 
−
** [http://www.uniprot.org/uniprot/P49917 P49917]
 
−
** [http://www.uniprot.org/uniprot/P49916 P49916]
 
−
** [http://www.uniprot.org/uniprot/P37913 P37913]
 
−
** [http://www.uniprot.org/uniprot/P51892 P51892]
 
−
** [http://www.uniprot.org/uniprot/P16272 P16272]
 
−
** [http://www.uniprot.org/uniprot/P33798 P33798]
 
−
** [http://www.uniprot.org/uniprot/P00970 P00970]
 
−
** [http://www.uniprot.org/uniprot/P00969 P00969]
 
−
** [http://www.uniprot.org/uniprot/P04819 P04819]
 
−
** [http://www.uniprot.org/uniprot/P19088 P19088]
 
−
** [http://www.uniprot.org/uniprot/P07717 P07717]
 
−
** [http://www.uniprot.org/uniprot/P26813 P26813]
 
−
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 
−
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 
−
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 
−
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 
−
** [http://www.uniprot.org/uniprot/P20492 P20492]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dna_ligase}}
+
{{#set: common name=delta-8_desaturase}}
−
{{#set: common name=dna_ligase_mrna_capping_enzyme}}
+
{{#set: ec number=EC-1.14.19.4}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_5024}}
−
{{#set: ec number=EC-6.5.1.7}}
+
{{#set: in pathway=PWY-7602}}
−
{{#set: ec number=EC-6.5.1.1}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec number=EC-6.5.1.6}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: gene associated=Tiso_gene_3498|Tiso_gene_14250|Tiso_gene_11251|Tiso_gene_6743|Tiso_gene_14249|Tiso_gene_12142}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:06, 21 March 2018

Reaction RXN-16101

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • delta-8_desaturase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7602, icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes): PWY-7602
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16101&oldid=39496"