Difference between revisions of "1.1.1.39-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** mitochondrial_malic_e...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
 +
** mitochondrial_malic_enzyme
 
** ORF
 
** ORF
−
** aldose_1-epimerase-like_enzyme
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.3.15 EC-5.1.3.15]
+
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
 +
** [http://enzyme.expasy.org/EC/1.1.1.39 EC-1.1.1.39]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ALPHA-GLC-6-P]][c] '''<=>''' 1 [[GLC-6-P]][c]
+
** 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 &alpha;-D-glucose 6-phosphate[c] '''<=>''' 1 &beta;-D-glucose 6-phosphate[c]
+
** 1 (S)-malate[c] '''+''' 1 NAD+[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17734]]
+
* Gene: [[Tiso_gene_12896]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_15139]]
+
* Gene: [[Tiso_gene_6675]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_12200]]
−
* [[Tiso_gene_14633]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_19480]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16249 16249]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12653 12653]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02739 R02739]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 +
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
 +
** [http://www.uniprot.org/uniprot/O59029 O59029]
 +
** [http://www.uniprot.org/uniprot/P16468 P16468]
 +
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
 +
** [http://www.uniprot.org/uniprot/P26616 P26616]
 +
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
 +
** [http://www.uniprot.org/uniprot/P37224 P37224]
 +
** [http://www.uniprot.org/uniprot/P37225 P37225]
 +
** [http://www.uniprot.org/uniprot/P37221 P37221]
 +
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
 +
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=mitochondrial_malic_enzyme}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=aldose_1-epimerase-like_enzyme}}
+
{{#set: ec number=EC-1.1.1.38}}
−
{{#set: ec number=EC-5.1.3.15}}
+
{{#set: ec number=EC-1.1.1.39}}
−
{{#set: gene associated=Tiso_gene_17734|Tiso_gene_15139|Tiso_gene_14633|Tiso_gene_19480}}
+
{{#set: gene associated=Tiso_gene_12896|Tiso_gene_6675|Tiso_gene_12200}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY-3641|GLUCONEO-PWY|PWY-7384|PWY-7686|PWY-7115|PWY-7118}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|orthology-creinhardtii|annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction 1.1.1.39-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • mitochondrial_malic_enzyme
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-malate[c] + 1 NAD+[c] => 1 pyruvate[c] + 1 CO2[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3641, L-carnitine degradation III: PWY-3641
    • 2 reactions found over 3 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-7686, L-malate degradation II: PWY-7686
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






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