Difference between revisions of "PWY-66"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] ** [ht...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
** 9-cis-epoxycarotenoid_dioxygenase
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** GDP-L-fucose biosynthesis I (from GDP-D-mannose)
** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
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** beta-carotene
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.63 EC-1.13.11.63]
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* Synonym(s):
 
* Synonym(s):
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** GDP-L-fucose biosynthesis I (de novo synthesis)
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''2''' reactions found over '''2''' reactions in the full pathway
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-129]][c] '''=>''' 2 [[RETINAL]][c]
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* [[1.1.1.271-RXN]]
* With common name(s):
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** 1 associated gene(s):
** 1 oxygen[c] '''+''' 1 all-trans-β-carotene[c] '''=>''' 2 all-trans-retinal[c]
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*** [[Tiso_gene_16970]]
 
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** 3 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
* [[Tiso_gene_4653]]
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*** [[orthology-esiliculosus]]
** IN-SILICO_ANNOTATION
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* [[GDPMANDEHYDRA-RXN]]
***EC-NUMBER
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** 2 associated gene(s):
* [[Tiso_gene_13078]]
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*** [[Tiso_gene_13093]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_13092]]
***EC-NUMBER
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** 3 reconstruction source(s) associated:
* [[Tiso_gene_7740]]
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*** [[orthology-athaliana]]
** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
***EC-NUMBER
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*** [[orthology-esiliculosus]]
* [[Tiso_gene_13079]]
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== Reaction(s) not found ==
** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
* RHEA:
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* ECOCYC:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32888 32888]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-66 PWY-66]
* LIGAND-RXN:
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* ARACYC:
** [http://www.genome.jp/dbget-bin/www_bget?R00032 R00032]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-66 PWY-66]
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
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{{#set: taxonomic range=TAX-2759}}
{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
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{{#set: common name=GDP-L-fucose biosynthesis I (from GDP-D-mannose)}}
{{#set: common name=beta-carotene}}
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{{#set: common name=GDP-L-fucose biosynthesis I (de novo synthesis)}}
{{#set: ec number=EC-1.13.11.63}}
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{{#set: reaction found=2}}
{{#set: gene associated=Tiso_gene_4653|Tiso_gene_13078|Tiso_gene_7740|Tiso_gene_13079}}
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{{#set: total reaction=2}}
{{#set: in pathway=PWY-6857}}
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{{#set: completion rate=100.0}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:07, 21 March 2018

Pathway PWY-66

  • taxonomic range:
  • common name:
    • GDP-L-fucose biosynthesis I (from GDP-D-mannose)
  • Synonym(s):
    • GDP-L-fucose biosynthesis I (de novo synthesis)

Reaction(s) found

2 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links