Difference between revisions of "RXN-16540"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16540 RXN-16540] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
 
* common name:
 
* common name:
−
** cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)
+
** acyl-coenzyme_a_oxidase
 +
** ORF
 +
** acyl-_dehydrogenase
 +
** acyl-CoA_dehydrogenase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.8.9 EC-1.3.8.9]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''2''' reactions found over '''13''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-8675]]
+
** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[PALMITYL-COA]][c] '''=>''' 1 [[CPD0-2117]][c] '''+''' 1 [[ETF-Reduced]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_8614]]
+
** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 palmitoyl-CoA[c] '''=>''' 1 trans-hexadec-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
−
** 1 reconstruction source(s) associated:
+
 
−
*** [[orthology-esiliculosus]]
+
== Genes associated with this reaction  ==
−
* [[UROPORIIIMETHYLTRANSA-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 1 associated gene(s):
+
* Gene: [[Tiso_gene_6475]]
−
*** [[Tiso_gene_8614]]
+
** Source: [[annotation-in-silico_annotation]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: EC-NUMBER
−
*** [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_5991]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.54-RXN 1.3.1.54-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.130-RXN 2.1.1.130-RXN]
+
* Gene: [[Tiso_gene_16631]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.131-RXN 2.1.1.131-RXN]
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.133-RXN 2.1.1.133-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=5.4.1.2-RXN 5.4.1.2-RXN]
+
* Gene: [[Tiso_gene_18566]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=R321-RXN R321-RXN]
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=R322-RXN R322-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=R341-RXN R341-RXN]
+
* Gene: [[Tiso_gene_883]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=R342-RXN R342-RXN]
+
** Source: [[annotation-experimental_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13824 RXN-13824]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13826 RXN-13826]
+
* Gene: [[Tiso_gene_17967]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7656]], Spodoptera littoralis pheromone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7656 PWY-7656]
 +
** '''6''' reactions found over '''22''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: taxonomic range=TAX-2157}}
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
−
{{#set: common name=cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)}}
+
{{#set: common name=ORF}}
−
{{#set: reaction found=2}}
+
{{#set: common name=acyl-_dehydrogenase}}
−
{{#set: total reaction=13}}
+
{{#set: common name=acyl-CoA_dehydrogenase}}
−
{{#set: completion rate=15.0}}
+
{{#set: ec number=EC-1.3.8.9}}
 +
{{#set: gene associated=Tiso_gene_6475|Tiso_gene_5991|Tiso_gene_16631|Tiso_gene_18566|Tiso_gene_883|Tiso_gene_17967}}
 +
{{#set: in pathway=PWY-7654|PWY-7656}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction RXN-16540

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
    • ORF
    • acyl-_dehydrogenase
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 an oxidized electron-transfer flavoprotein[c] + 1 palmitoyl-CoA[c] => 1 trans-hexadec-2-enoyl-CoA[c] + 1 a reduced electron-transfer flavoprotein[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7654, (8E,10E)-dodeca-8,10-dienol biosynthesis: PWY-7654
    • 6 reactions found over 11 reactions in the full pathway
  • PWY-7656, Spodoptera littoralis pheromone biosynthesis: PWY-7656
    • 6 reactions found over 22 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16540&oldid=39652"