Difference between revisions of "RXN-18209"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRODIPICSYN-RXN DIHYDRODIPICSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydro...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18209 RXN-18209] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRODIPICSYN-RXN DIHYDRODIPICSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18209 RXN-18209] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** dihydrodipicolinate_synthase
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/4.3.3.7 EC-4.3.3.7]
 
 
* Synonym(s):
 
* Synonym(s):
−
** dihydropicolinate synthetase
 
−
** dihydrodipicolinic acid synthase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PYRUVATE]][c] '''+''' 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[CPD-19491]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPDQT-27]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 pyruvate[c] '''+''' 1 L-aspartate-semialdehyde[c] '''=>''' 1 (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate[c] '''+''' 1 H+[c] '''+''' 1 H2O[c]
+
** 1 3-isopropyl-6-(methylthio)-2-oxohexanoate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 6-(methylthio)-2-oxohexanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_14829]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''10''' reactions found over '''30''' reactions in the full pathway
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02292 R02292]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P43797 P43797]
 
−
** [http://www.uniprot.org/uniprot/O26892 O26892]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
 
−
** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
 
−
** [http://www.uniprot.org/uniprot/P19808 P19808]
 
−
** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
 
−
** [http://www.uniprot.org/uniprot/O05969 O05969]
 
−
** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
 
−
** [http://www.uniprot.org/uniprot/Q04796 Q04796]
 
−
** [http://www.uniprot.org/uniprot/Q57695 Q57695]
 
−
** [http://www.uniprot.org/uniprot/O25657 O25657]
 
−
** [http://www.uniprot.org/uniprot/O67216 O67216]
 
−
** [http://www.uniprot.org/uniprot/O29352 O29352]
 
−
** [http://www.uniprot.org/uniprot/O84366 O84366]
 
−
** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
 
−
** [http://www.uniprot.org/uniprot/P63945 P63945]
 
−
** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
 
−
** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
 
−
** [http://www.uniprot.org/uniprot/Q43038 Q43038]
 
−
** [http://www.uniprot.org/uniprot/P49423 P49423]
 
−
** [http://www.uniprot.org/uniprot/Q55513 Q55513]
 
−
** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
 
−
** [http://www.uniprot.org/uniprot/Q42948 Q42948]
 
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** [http://www.uniprot.org/uniprot/Q42940 Q42940]
 
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** [http://www.uniprot.org/uniprot/O86841 O86841]
 
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** [http://www.uniprot.org/uniprot/P24847 P24847]
 
−
** [http://www.uniprot.org/uniprot/P24846 P24846]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dihydrodipicolinate_synthase}}
+
{{#set: in pathway=PWYQT-4450}}
−
{{#set: ec number=EC-4.3.3.7}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: common name=dihydropicolinate synthetase|dihydrodipicolinic acid synthase}}
+
{{#set: reconstruction source=annotation-experimental_annotation}}
−
{{#set: gene associated=Tiso_gene_14829}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:08, 21 March 2018

Reaction RXN-18209

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-isopropyl-6-(methylthio)-2-oxohexanoate[c] + 1 H+[c] => 1 CO2[c] + 1 6-(methylthio)-2-oxohexanoate[c]

Genes associated with this reaction

Pathways

  • PWYQT-4450, aliphatic glucosinolate biosynthesis, side chain elongation cycle: PWYQT-4450
    • 10 reactions found over 30 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-18209&oldid=39750"