|
|
(One intermediate revision by the same user not shown) |
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URANA1t URANA1t] == |
− | * taxonomic range: | + | * direction: |
− | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-33154] | + | ** REVERSIBLE |
| * common name: | | * common name: |
− | ** palmitate biosynthesis I (animals and fungi) | + | ** Uracil:Na+ symporter, extracellular |
| * Synonym(s): | | * Synonym(s): |
− | ** palmitic acid biosynthesis
| |
− | ** de novo lipogenesis
| |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''31''' reactions found over '''31''' reactions in the full pathway
| + | * With identifiers: |
− | * [[3.1.2.21-RXN]] | + | ** 1.0 [[URACIL]][e] '''+''' 1.0 [[NA+]][e] '''<=>''' 1.0 [[NA+]][c] '''+''' 1.0 [[URACIL]][c] |
− | ** 0 associated gene:
| + | * With common name(s): |
− | ** 1 reconstruction source(s) associated: | + | ** 1.0 uracil[e] '''+''' 1.0 Na+[e] '''<=>''' 1.0 Na+[c] '''+''' 1.0 uracil[c] |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[4.2.1.58-RXN]]
| + | == Genes associated with this reaction == |
− | ** 6 associated gene(s):
| + | Genes have been associated with this reaction based on different elements listed below. |
− | *** [[Tiso_gene_135]]
| + | * Gene: [[Tiso_gene_1943]] |
− | *** [[Tiso_gene_13394]]
| + | ** Source: [[orthology-creinhardtii]] |
− | *** [[Tiso_gene_6884]]
| + | == Pathways == |
− | *** [[Tiso_gene_136]]
| + | == Reconstruction information == |
− | *** [[Tiso_gene_10876]]
| + | * Category: [[orthology]] |
− | *** [[Tiso_gene_500]]
| + | ** Source: [[orthology-creinhardtii]] |
− | ** 3 reconstruction source(s) associated: | + | *** Tool: [[pantograph]] |
− | *** [[annotation-in-silico_annotation]] | + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[4.2.1.59-RXN]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_6885]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | * [[4.2.1.61-RXN]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[PALMITOYL-COA-HYDROLASE-RXN]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[Tiso_gene_801]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-creinhardtii]]
| + | |
− | * [[RXN-9514]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]] | + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9515]]
| + | |
− | ** 5 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]] | + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9518]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9520]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]] | + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-9521]]
| + | |
− | ** 5 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9524]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]] | + | |
− | * [[RXN-9526]]
| + | |
− | ** 5 associated gene(s):
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9528]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9530]]
| + | |
− | ** 5 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9532]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9533]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN-9534]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_10778]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | * [[RXN-9536]]
| + | |
− | ** 10 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10415]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_624]]
| + | |
− | *** [[Tiso_gene_16579]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9537]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_6671]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_6885]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_9421]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | ** 5 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[orthology-creinhardtii]]
| + | |
− | *** [[orthology-synechocystis]] | + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | * [[RXN-9538]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10778]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | * [[RXN-9540]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_9885]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13083]]
| + | |
− | ** 4 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9542]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_10778]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-synechocystis]]
| + | |
− | * [[RXN-9549]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | * [[RXN-9648]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9650]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9651]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9652]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9653]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9654]]
| + | |
− | ** 9 associated gene(s):
| + | |
− | *** [[Tiso_gene_15991]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_19302]]
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_5939]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_14485]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | *** [[orthology-esiliculosus]]
| + | |
− | * [[RXN-9655]]
| + | |
− | ** 6 associated gene(s):
| + | |
− | *** [[Tiso_gene_500]]
| + | |
− | *** [[Tiso_gene_13394]]
| + | |
− | *** [[Tiso_gene_10876]]
| + | |
− | *** [[Tiso_gene_136]]
| + | |
− | *** [[Tiso_gene_6884]]
| + | |
− | *** [[Tiso_gene_135]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[annotation-in-silico_annotation]]
| + | |
− | *** [[manual-primary_network]]
| + | |
− | *** [[annotation-experimental_annotation]]
| + | |
− | * [[RXN3O-9780]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
| + | |
− | == Reaction(s) not found ==
| + | |
| == External links == | | == External links == |
− | {{#set: taxonomic range=TAX-33154}} | + | {{#set: direction=REVERSIBLE}} |
− | {{#set: common name=palmitate biosynthesis I (animals and fungi)}} | + | {{#set: common name=Uracil:Na+ symporter, extracellular}} |
− | {{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}} | + | {{#set: gene associated=Tiso_gene_1943}} |
− | {{#set: reaction found=31}} | + | {{#set: in pathway=}} |
− | {{#set: total reaction=31}} | + | {{#set: reconstruction category=orthology}} |
− | {{#set: completion rate=100.0}} | + | {{#set: reconstruction source=orthology-creinhardtii}} |
| + | {{#set: reconstruction tool=pantograph}} |
Genes have been associated with this reaction based on different elements listed below.