Difference between revisions of "URANA1t"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URANA1t URANA1t] == * direction: ** REVERSIBLE * common name: ** Uracil:Na+ symporter, extracellula...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
+
[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URANA1t URANA1t] ==
* taxonomic range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-33154]
+
** REVERSIBLE
 
* common name:
 
* common name:
** palmitate biosynthesis I (animals and fungi)
+
** Uracil:Na+ symporter, extracellular
 
* Synonym(s):
 
* Synonym(s):
** palmitic acid biosynthesis
 
** de novo lipogenesis
 
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''31''' reactions found over '''31''' reactions in the full pathway
+
* With identifiers:
* [[3.1.2.21-RXN]]
+
** 1.0 [[URACIL]][e] '''+''' 1.0 [[NA+]][e] '''<=>''' 1.0 [[NA+]][c] '''+''' 1.0 [[URACIL]][c]
** 0 associated gene:
+
* With common name(s):
** 1 reconstruction source(s) associated:
+
** 1.0 uracil[e] '''+''' 1.0 Na+[e] '''<=>''' 1.0 Na+[c] '''+''' 1.0 uracil[c]
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
 
* [[4.2.1.58-RXN]]
+
== Genes associated with this reaction  ==
** 6 associated gene(s):
+
Genes have been associated with this reaction based on different elements listed below.
*** [[Tiso_gene_135]]
+
* Gene: [[Tiso_gene_1943]]
*** [[Tiso_gene_13394]]
+
** Source: [[orthology-creinhardtii]]
*** [[Tiso_gene_6884]]
+
== Pathways  ==
*** [[Tiso_gene_136]]
+
== Reconstruction information  ==
*** [[Tiso_gene_10876]]
+
* Category: [[orthology]]
*** [[Tiso_gene_500]]
+
** Source: [[orthology-creinhardtii]]
** 3 reconstruction source(s) associated:
+
*** Tool: [[pantograph]]
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[4.2.1.59-RXN]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_6885]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13394]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
* [[4.2.1.61-RXN]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_135]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
* [[PALMITOYL-COA-HYDROLASE-RXN]]
+
** 1 associated gene(s):
+
*** [[Tiso_gene_801]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-creinhardtii]]
+
* [[RXN-9514]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_16579]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_624]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9515]]
+
** 5 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9518]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_135]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9520]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13394]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-9521]]
+
** 5 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_136]]
+
** 2 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9524]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_624]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_16579]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9526]]
+
** 5 associated gene(s):
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_13394]]
+
** 2 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9528]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_624]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_16579]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9530]]
+
** 5 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
** 2 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9532]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_13394]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9533]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10876]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-9534]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_10778]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_10876]]
+
** 3 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
* [[RXN-9536]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_624]]
+
*** [[Tiso_gene_16579]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_135]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9537]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_6671]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_6885]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_9421]]
+
*** [[Tiso_gene_10876]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
*** [[orthology-synechocystis]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9538]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10778]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
** 3 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
* [[RXN-9540]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13083]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9542]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10778]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
* [[RXN-9549]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[RXN-9648]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9650]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_5939]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9651]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_5939]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9652]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_135]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9653]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_14485]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9654]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_14485]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9655]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_135]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN3O-9780]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-33154}}
+
{{#set: direction=REVERSIBLE}}
{{#set: common name=palmitate biosynthesis I (animals and fungi)}}
+
{{#set: common name=Uracil:Na+ symporter, extracellular}}
{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
+
{{#set: gene associated=Tiso_gene_1943}}
{{#set: reaction found=31}}
+
{{#set: in pathway=}}
{{#set: total reaction=31}}
+
{{#set: reconstruction category=orthology}}
{{#set: completion rate=100.0}}
+
{{#set: reconstruction source=orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:11, 21 March 2018

Reaction URANA1t

  • direction:
    • REVERSIBLE
  • common name:
    • Uracil:Na+ symporter, extracellular
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 uracil[e] + 1.0 Na+[e] <=> 1.0 Na+[c] + 1.0 uracil[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links